Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00021 ATGCATGTTGCAAATGCTCAGATACGGTCTTTTAACTTGAACAAAAACTTCAACCCAGCTCAATCTCATGAACTATCCCTGGATGGAGATGCAACTTACTCACAAGCTTTTGATCATGTCCAGCTCACAGGTAAAACAGATACACCCATGATGGGATTTGGAAGAATCACAACCAAGCCTATGCGCCTTATGAAAAACTACTCAGAAAAACAAAGATATGACTTCACCACCAACTTTTCCTTTCTTGTCATCTCAAACAGGACTTACCATGGAGAAGGTTTGGCATTCTTCATTGCAAGCCCTGAGCTGCCACTTCATCAACATGACGGTGGCATCAACGGTGGAGGGCTTGGTCTTCTGAATCCTTGCCACCCTCGCCCAGATGAGTACTCTTTTGTTGCTGTTGAGTTTGACACACACTCAGATTCTTTTGACCCAAGAGGACCTCAACCACATGTGGGAATAGATGTTAATTCTATGATCTCCACCAAGCATGTCAAATGGCCTGCAGATTTCTCAGACATAGCAACTGTTTACAACTGTAGTGTTGTATACAGCACCGGAAGCAGGCGGCTCGACGTTTACTTCACCGGAGGATCCTTCAATGGCCCTGCACCAAAGAACCTTTCAACCCACTTGGATCTCACTGATTACTTATATGATCCTGTTACTCTTGGCATTTCAGCTTCAACAAGGAATTATACTGTTCAGTTTAGCCTGCTTTCATGGTCATTCAGTGCAAAGTTATCAATTACCGGTGATGAAAACAGAAAAGGGAGTAAGAAATTGAAGGAAGGACTAGAAATTGGCACAGCTTGGTTTTTGAGTTTGTTAGTGTTGGTCCTGGTCTTGGATTTCATACACAAGAGGAGAAGAAGAAGAAAACATGAACTTGATCCTATGGATCATGAATTCCAAACTGGCACTGGACCACAGAGGATCAGCTACAACAGATTGGTGTCCGCCACGAATAACTTCGAAGAGGCGAAGAAGCTCGGAAAAGGAGGCTTTGGTGGTGTTTATAAAGGATATTTCAAAGATACAGACTCTTATGCTGCTGTAAAGAAGATATCAGCTGATTCAAGGCAAGGGATAAATGAATATGCAGCTGAGGTGAAGATCATTAGCCAACTGAGGCACAGGAATTTGGTGAGACTTACTGGTTGGTGTCACAAGAAGAATGAATTCATTCTGATATATGAGTACATGCCGAATGGAAGCTTGGATTATTGTCTTTTTGATGGAGTATGCTTCTTGTCTTGGCAAGTAAGGTACAACATAGCTTTGGGATTGGCATCAGCATTGCTGTATCTGCAAGAAGGGTGGGAAAAGTGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCAGAGTTCAATGCTAAACTTGGGGATTTTGGATTGGCTAGGCTTGTGGATCATGAGAAAGGTTCAAGGACCACAAAAACTGCAGGCACACTTGGTTACATAGCACCAGAATACATAAAAACAGGAAAAGTTGGAAAGGAATCTGACATATACAGTTTTGGGGTGGTTTTGTTGGAGATAGCAAGTGGGAAAAAGGTTATACACCACAGAGAAATGGAAGGTCGTGTGACTCAAGTTTCATTGGTAGAGTGGGTTTGGGAGCTCTATGGTTTGAGAAATATCATAGCAGCAGCAGATTCAAGTCTATGTAGGAATTTTGATGTTCAACAAATGGAATGTATTCTTGTTGTTGGGCTTTGGTGTGCTCATCCAGATAGCAAATGCAGACCCTCTATAAGGCAAGTGTTGAAGGTTCTTAACTTTGATGCTCCTTTACCTGTTCTTCCACAAAGGATGCCTATTCTACCACCCTTTCTTCTTCCTCATGCAACAAATGAGATCTTTTTCACTGCTATATCAATCCAGAATTGCTATATAAATAACTGA 1923 0.4186 MHVANAQIRSFNLNKNFNPAQSHELSLDGDATYSQAFDHVQLTGKTDTPMMGFGRITTKPMRLMKNYSEKQRYDFTTNFSFLVISNRTYHGEGLAFFIASPELPLHQHDGGINGGGLGLLNPCHPRPDEYSFVAVEFDTHSDSFDPRGPQPHVGIDVNSMISTKHVKWPADFSDIATVYNCSVVYSTGSRRLDVYFTGGSFNGPAPKNLSTHLDLTDYLYDPVTLGISASTRNYTVQFSLLSWSFSAKLSITGDENRKGSKKLKEGLEIGTAWFLSLLVLVLVLDFIHKRRRRRKHELDPMDHEFQTGTGPQRISYNRLVSATNNFEEAKKLGKGGFGGVYKGYFKDTDSYAAVKKISADSRQGINEYAAEVKIISQLRHRNLVRLTGWCHKKNEFILIYEYMPNGSLDYCLFDGVCFLSWQVRYNIALGLASALLYLQEGWEKCVLHRDIKSSNIMLDSEFNAKLGDFGLARLVDHEKGSRTTKTAGTLGYIAPEYIKTGKVGKESDIYSFGVVLLEIASGKKVIHHREMEGRVTQVSLVEWVWELYGLRNIIAAADSSLCRNFDVQQMECILVVGLWCAHPDSKCRPSIRQVLKVLNFDAPLPVLPQRMPILPPFLLPHATNEIFFTAISIQNCYINN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00021 640 Gene3D - 9 261 - -
Stsc11g00021 640 ProSitePatterns Legume lectins beta-chain signature. 133 139 IPR019825 -
Stsc11g00021 640 FunFam L-type lectin-domain containing receptor kinase IX.1 311 402 - -
Stsc11g00021 640 SMART serkin_6 326 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00021 640 Gene3D Phosphorylase Kinase; domain 1 311 402 - -
Stsc11g00021 640 CDD STKc_IRAK 340 599 - -
Stsc11g00021 640 FunFam Lectin-domain containing receptor kinase A4.3 403 617 - -
Stsc11g00021 640 ProSiteProfiles Protein kinase domain profile. 326 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00021 640 Pfam Legume lectin domain 10 254 IPR001220 GO:0030246
Stsc11g00021 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Stsc11g00021 640 SUPERFAMILY Protein kinase-like (PK-like) 310 621 IPR011009 -
Stsc11g00021 640 Pfam Protein kinase domain 326 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00021 640 Gene3D Transferase(Phosphotransferase) domain 1 403 613 - -
Stsc11g00021 640 CDD lectin_legume_LecRK_Arcelin_ConA 10 246 IPR001220 GO:0030246
Stsc11g00021 640 ProSitePatterns Protein kinases ATP-binding region signature. 332 356 IPR017441 GO:0005524
Stsc11g00021 640 SUPERFAMILY Concanavalin A-like lectins/glucanases 9 250 IPR013320 -
Stsc11g00021 640 PANTHER - 54 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00021 Stsc-Chr11 118499 120421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00021 24 613 Receptor kinase-like Gene Family AT5G10530 44.884 6.41e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc11g00021 Pkinase 5.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00021 - - cam:101492002 625.55