Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00017 ATGGAGAATTATACATATCCACCCTACCCGGAATCCAGTGAGTCCTCGCCGCGCTCCAGGGAGGTCGACTTCGAGAATCCGCCCCCGTGGGACGAGCAGCAGCCACCGCCCACCAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGCACCCACGACAACCAGCTCTCCTACGTTGGCGGCGACACCAAGATCCTTGCCGTCGACCGCAACATCAAGTTCCCCGCCTTCCNNNNNNNNNNCAAGCTCGCCGCCCTCTGTGACTGCGCCTCGCCGGAGAATCTCACACTCAAGTATCAGCTCCCCGGTGAGGATCTCGACGCCCTTATCTCCGTCACCACCGACGATGACCTCGATCACATGATGCATGAGTATGATCGCCTCTTCCGTGCCTCCGCCAAACCCGCCAGGATGAGGCTCTTCCTCTTCACCGCTTCAACTACATCCGCTCCGCCTAGTTTCTCCACTGATCGCGATCGCTTCGTTGAGGCTCTCAACTCGGGTTCCGTCCCGGTTCAGCCCGACCCGGTCAAACCCCCTCCTGTTGTTCCTGCCAACGTTGATTTTCTCTTCGGGCTTGAGAAGGCAGCGCCTCCTCCCCCTCAGCCTGCGCCGCCTCTTGCCGCAGTCAAGTTCCACGATCCTGTCCCGGAGCCTGTGGCGCCGCCACCAGAGTACCAGACGCGCGGAGCTGTGAACGATCGCGTTATCGGATCGGATCCCAACGTGAACCCGATCGACGTTCAGAGACAGTTACAGCAAGAGCTGCAGCGGTTGCAGATCGCGGAGAGTGATCAGTCTATGTACCGTAGGAGAAGCGAGGATGGCTTCTCTGCAGGTTATGGCGTTGCTGGAGGCGGTGATTATTACATGCAGAAGATGCCTGAGAAGGTTCCCCTGTCGAATTCACCTGCTACTGTGCCGCACCCTGGAAATTACTGGCCGGAAAAGCAATTTTCAGGCGAAGGTTTCCCCACGGCGATTTCGACGGCTCCCGGAGGTGGAGACCAACAGTTTTACGTGGTTCCGGCGCCGGGGACGTTCTATCATACTCCGATGGTACGTCCGTCGGCGGCGCCGGTCACTCAAGGTTACTACGCTGTGCAACGTATGAGCTCTGATGGATACCGTGAGCAGCCAGTGTACGGCGGAGCGCCACCATCTAAAGCAGCGTTTTCGTCTGCGGGAGCGACAAATTTGGCACAGGGTTCAGCGGTTAAAGCTCCTGGTTATCCAGATGGATACGGAGTGGTTCGGCCAGGTGGAGTGCCGGATAATAATGCGTACGCGCAAGTTGCTTACGATAGTGGTAGTGGGAGACAGGTTTATTATACTGCACCGGGTGGTGTAATGCACGCACCTCAATATCAAGGGATTGCTCCACCGGTTAGTGGTGATGTAAGAACTGTTGCTGCGGGTTCGTTGGGCCAGGATGTTACCAAAGTTGTAAACAAGGCTTCCCAAGGTTCTGTGTGA 1491 0.5694 MENYTYPPYPESSESSPRSREVDFENPPPWDEQQPPPTNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRNIKFPAFXXXXKLAALCDCASPENLTLKYQLPGEDLDALISVTTDDDLDHMMHEYDRLFRASAKPARMRLFLFTASTTSAPPSFSTDRDRFVEALNSGSVPVQPDPVKPPPVVPANVDFLFGLEKAAPPPPQPAPPLAAVKFHDPVPEPVAPPPEYQTRGAVNDRVIGSDPNVNPIDVQRQLQQELQRLQIAESDQSMYRRRSEDGFSAGYGVAGGGDYYMQKMPEKVPLSNSPATVPHPGNYWPEKQFSGEGFPTAISTAPGGGDQQFYVVPAPGTFYHTPMVRPSAAPVTQGYYAVQRMSSDGYREQPVYGGAPPSKAAFSSAGATNLAQGSAVKAPGYPDGYGVVRPGGVPDNNAYAQVAYDSGSGRQVYYTAPGGVMHAPQYQGIAPPVSGDVRTVAAGSLGQDVTKVVNKASQGSV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00017 496 MobiDBLite consensus disorder prediction 201 229 - -
Stsc11g00017 496 SMART PB1_new 56 150 IPR000270 GO:0005515
Stsc11g00017 496 MobiDBLite consensus disorder prediction 1 15 - -
Stsc11g00017 496 MobiDBLite consensus disorder prediction 1 38 - -
Stsc11g00017 496 MobiDBLite consensus disorder prediction 199 233 - -
Stsc11g00017 496 MobiDBLite consensus disorder prediction 306 335 - -
Stsc11g00017 496 Pfam PB1 domain 57 149 IPR000270 GO:0005515
Stsc11g00017 496 Gene3D - 62 150 - -
Stsc11g00017 496 PANTHER OS05G0427100 PROTEIN-RELATED 9 356 - -
Stsc11g00017 496 SUPERFAMILY CAD & PB1 domains 57 154 - -
Stsc11g00017 496 CDD PB1_UP2 45 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00017 Stsc-Chr11 92391 94366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00017 41 171 MAP Kinase Kinase Kinase AT3G46920 42.143 8.37e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00017 - - adu:107480527 833.943