Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00007 ATGCCAAGCTTAGCTGTCATCACAATGGACAATTATAATGATTCTAGTCGAATCATAGATGGCAATTTTGATGACCCTCGTTTGACAGACTATTATACCTTGCTTGAAAATATAAGGGGTCTTAAAGAAGGGAAGGCAGTACAGGTTCCAATATATGATTTCAAGTCTAGTTCTCGTGTAGGGTACAGGACTGTTGAAGTCCCTAGCTCCCGCATTGTCATCATAGAAGGCATTTATGCCTTAAGTGAAAAATTACGTCCTTTGCTTGATCTTCGTGTTTCAGTCACCGGGGGAGTTCACTTTGACCTTGTCAAGCGTGTGTTGCGTGACATTCAACGTGCCGGTCAAGAGCCTGAAGAAATCATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCTGATCTCCAAACAGCACATATAAAAATCATTAACAAGTTTAATCCATTCTCTGGATTCCAGAACCCCACCTACATATTGAAGTCACTAAAAGCTGTGACAGAGGATCAAATCAAGTCAGTGATTGCTGCTGAGCATACTGAGACAAGAGAGGAAACATATGACATATATCTTCTCCCCCCGGGGGAAGACCCTGAAGCATGTCAATCATACCTGAGGATGAGGAACCGCGATGGGAAGTATAATCTCATGTTTGAGGAATGGGTCACAGATATTCCATTCATAATATCACCCAGAATAACATTTGAGGTCAGTGTGCGCCTTCTAGGAGGGTTGATGGCATTGGGGTACACAATTGCAGCAATACTAAAACGAAGCAGCCATGTCTTTTCCGATGATAAGATGACTGTAAAAACTGATTGGCTCGAACAAGTTAATCGCCTATATGTTCAGGTTCAAGGGAAAGATAGAAACTATGTTAAAGTTATCGCGGAGAGACTGGGATTGGATGGGTCATATGTTCCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTCGTTAATGATTTAATGGCACTGCCAGAGGATCTTAAGACAAAGCTCAGCATTGATGATGATATGGTTTCAAGCCCTAAAGAAGCCCTTTCTCGCGCGTCTGCTGATAGGAGAATGAAGTATCTGAATCGTGGTATTTCTCACTCATATTCAACTCAGAGGGAGAAGCATCTATCTAAGTTGACTAGACTAGCTATAAATAACAGAAGATTTGATGGGAGAGCTCTTGAATCACCTGCTCCAGTTGCCAACCAAGGAGTCATTACTCAGCTTTCTGAACAAATATCCACATTAACGGAAAGAATGGATGAGTTCACGAGCCGTATTGAGGAGCTAAATTCGAAGTTCGCATCCAGAAAAGCCAGTCAACAGAACATATCCTTGCCAACTGAACCCTGCAATGGCCCAGGTCCCACTTCTCTTTTTGTATCTGGATTGTCAAATGGTTCATCGTTGCTGCCTCATTCTTCATCATCTTCCCAATTAGCCAGGGAGTCTCCCCTGATGGAAGAGGTTTTGCTTGTTGCGCGAGGTCAACGGCAAATAATACATCAACTAGACTCTCTAAGTAATCTGTTGCATGAATTATGCGGACAAAGGTCGCAGCAGGGAAGAACAGACCAGACAAACAGAATGCAAGAAGTGGAAACCATTGCCATCCCCCTGGTTCTGACTTTGGCCATTGGTGCTGTTGGTGTGTTCTTGTTCAGGGGTTTCACATCCCAAAAATAA 1704 0.4249 MPSLAVITMDNYNDSSRIIDGNFDDPRLTDYYTLLENIRGLKEGKAVQVPIYDFKSSSRVGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSLKAVTEDQIKSVIAAEHTETREETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFSDDKMTVKTDWLEQVNRLYVQVQGKDRNYVKVIAERLGLDGSYVPRTYIEQIQLEKLVNDLMALPEDLKTKLSIDDDMVSSPKEALSRASADRRMKYLNRGISHSYSTQREKHLSKLTRLAINNRRFDGRALESPAPVANQGVITQLSEQISTLTERMDEFTSRIEELNSKFASRKASQQNISLPTEPCNGPGPTSLFVSGLSNGSSLLPHSSSSSQLARESPLMEEVLLVARGQRQIIHQLDSLSNLLHELCGQRSQQGRTDQTNRMQEVETIAIPLVLTLAIGAVGVFLFRGFTSQK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00007 567 Gene3D - 166 325 - -
Stsc11g00007 567 Pfam Phosphoribulokinase / Uridine kinase family 22 148 IPR006083 GO:0005524|GO:0016301
Stsc11g00007 567 Coils Coil 412 439 - -
Stsc11g00007 567 SUPERFAMILY CYTH-like phosphatases 173 319 IPR033469 -
Stsc11g00007 567 ProSiteProfiles CYTH domain profile. 160 322 IPR023577 -
Stsc11g00007 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 148 IPR027417 -
Stsc11g00007 567 CDD UMPK_like 1 151 - -
Stsc11g00007 567 PANTHER URIDINE KINASE 5 335 - -
Stsc11g00007 567 Pfam CYTH domain 182 316 IPR023577 -
Stsc11g00007 567 Gene3D - 1 160 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00007 Stsc-Chr11 42460 46670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00007 17 148 PRT Gene Family AT1G55810 32.331 6.14e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00007 K00876 - gmx:100803122 953.74