Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00003 ATGGGGTGTTCATTTTCTGGTTTGAACGCACTTTACGATTCCGTTAACGGAGGCGGAGATGTTTGGATCAACGAGAACAGATTCCGTATCGTTCGGCAGCTCGGTGAAGGTGGCAACGCCTATATCTTCCTCGTCAAGGACCTTCCCGCCGACAACCCCTCCGGCGGTTTCTCCGCCAAGCTCAAACAGTCCTCTCATATCTCCGAGGACGGAACATATGCTATGAAAAAGGTCCTCATCAGGAGCAATGAGCAGCTGGAGTTGGTCAGGGAGGACATCCGCGTGTCATCGCTGTTCAACCACCCAAATCTGCTCCCTCTTCTCGATCATGCAATCATTTCTGTCAAGCCTACTCCACAAAGATCTTGGAACCACGAGGCATATTTGTTATTTCCAGTTCATTTGGATGGAACACTGCTAGATAATACCAAGACAATGCAAGCCAGGAAGGAATCCTTTCCTACCACGGATGTACTTCAAATCTTTCGACAGCTTTGTGCAGGACTCAAGCATATGCACAGTTTAGATACTCCATATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGAAAACCACCTCTTGCCATACTTATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCACATTGGTAACAGATCAGAGGCACTCCAATTGCAGTTTGTGAGGTTGTATTGCCTAATATTGTAG 708 0.4689 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGNAYIFLVKDLPADNPSGGFSAKLKQSSHISEDGTYAMKKVLIRSNEQLELVREDIRVSSLFNHPNLLPLLDHAIISVKPTPQRSWNHEAYLLFPVHLDGTLLDNTKTMQARKESFPTTDVLQIFRQLCAGLKHMHSLDTPYAHNDVKPGNVLITHRKGKPPLAILMDFGSARPARKHIGNRSEALQLQFVRLYCLIL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00003 235 ProSiteProfiles Protein kinase domain profile. 28 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00003 235 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 226 - -
Stsc11g00003 235 SUPERFAMILY Protein kinase-like (PK-like) 21 215 IPR011009 -
Stsc11g00003 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Stsc11g00003 235 SMART serkin_6 28 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00003 235 Gene3D Transferase(Phosphotransferase) domain 1 15 229 - -
Stsc11g00003 235 Pfam Protein kinase domain 58 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00003 Stsc-Chr11 18031 20874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00003 24 210 Receptor kinase-like Gene Family AT2G31880 27.660 4.39e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc11g00003 Pkinase 3.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00003 K08856 - gmx:100803659 391.734