Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00002 ATGGGGTGTTCATTTTCTGGTTTGAACGCACTTTACGATTCCGTTAACGGAGGCGGAGATGTTTGGATCAACGAGAACAGATTCCGTATCGTTCGGCAGCTCGGTGAAGGTGGCAACGCCTATATCTTCCTCGTCAAGGACCTTCCCGCCGACAACCCCTCCGGCGGTTTCTCCGCCAAGCTCAAACAGTCCTCTCATATCTCCGAGGACGGAACATATGCTATGAAAAAGGTCCTCATCAGGAGCAATGAGCAGCTGGAGTTGGTCAGGGAGGACATCCGCGTGTCATCGCTGTTCAACCACCCAAATCTGCTCCCTCTTCTCGATCATGCAATCATTTCTGTCAAGCCTACTCCACAAAGATCTTGGAACCACGAGGCATATTTGTTATTTCCAGTTCATTTGGATGGAACACTGCTAGATAATACCAAGACAATGCAAGCCAGGAAGGAATCCTTTCCTACCACGGATGTACTTCAAATCTTTCGACAGCTTTGTGCAGGACTCAAGCATATGCACAGTTTAGATACTCCATATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGAAAACCACCTCTTGCCATACTTATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCACATTGGTAACAGATCAGAGGCACTCCAATTGCAGGTGCTTTGTTCAACCCTTTTTTCTCTCTGTAAATTTTGTTTTATAATGAAATTCATGCACTTTGCTAACCATATTTTAGAATATTTTATTGACGCTTTTGCCCATTTGTAG 789 0.4499 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGNAYIFLVKDLPADNPSGGFSAKLKQSSHISEDGTYAMKKVLIRSNEQLELVREDIRVSSLFNHPNLLPLLDHAIISVKPTPQRSWNHEAYLLFPVHLDGTLLDNTKTMQARKESFPTTDVLQIFRQLCAGLKHMHSLDTPYAHNDVKPGNVLITHRKGKPPLAILMDFGSARPARKHIGNRSEALQLQVLCSTLFSLCKFCFIMKFMHFANHILEYFIDAFAHL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00002 262 Pfam Protein kinase domain 58 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00002 262 SMART serkin_6 28 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00002 262 ProSiteProfiles Protein kinase domain profile. 28 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc11g00002 262 Gene3D Transferase(Phosphotransferase) domain 1 15 235 - -
Stsc11g00002 262 SUPERFAMILY Protein kinase-like (PK-like) 21 215 IPR011009 -
Stsc11g00002 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Stsc11g00002 262 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00002 Stsc-Chr11 18011 20874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00002 24 244 Receptor kinase-like Gene Family AT2G31880 26.754 3.22e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc11g00002 Pkinase 5.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00002 K08856 - gmx:100803659 391.734