Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc118g00008 ATGTCTATTAATTCTGGCAAGCATGATTGGTGGTACAAAGCATGTGATGTCTGTCCAAAGAAGGTTGACCCTAAGGAAGATGGTACGTGGGAGTGTAAGAGATGTCAGAAAGTAACGAAAACCTACACTATCAGGTATAAGGTGGAGATCATTGCATTTGATGAGACAACTACCATTACACTACTTCTTTGGGACAATGAAGTGCTTACTTTGCTTGGGGTGAAGGCACAAACTGTGCATGATAGTATGGCAGCCACCTATGAAGGATATCCATCTATACTTGATGAACTGCTGGAGAGGAAACTGCTTTTTAGGATCAATGTTAAAGCTGAAAATATTAGTGGCAAAGATACTATCTTTACTGTATGGGACATTTGTTCCGACGAAGATGTGGTTGAACGCTACTACCCAAAACTAGATCTTACTGATAACACAACACAGACAGGGCTGACTGAAGATGGCTCTAGCAATGTTCTGGGTATTTCGCAAGCTGTGGTTAATCTTCAAAATGATAGTGATAGTTAG 525 0.4057 MSINSGKHDWWYKACDVCPKKVDPKEDGTWECKRCQKVTKTYTIRYKVEIIAFDETTTITLLLWDNEVLTLLGVKAQTVHDSMAATYEGYPSILDELLERKLLFRINVKAENISGKDTIFTVWDICSDEDVVERYYPKLDLTDNTTQTGLTEDGSSNVLGISQAVVNLQNDSDS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc118g00008 174 CDD RPA1_DBD_C 10 122 IPR047192 -
Stsc118g00008 174 SUPERFAMILY Nucleic acid-binding proteins 5 125 IPR012340 -
Stsc118g00008 174 Gene3D - 1 126 IPR012340 -
Stsc118g00008 174 Pfam Replication factor-A C terminal domain 9 117 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc118g00008 Stsc-Chr118 40000 41228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc118g00008 11 111 Core DNA Replication Machinery Family AT5G08020 29.126 5.03e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc118g00008 - K07466 aip:107630584 156.377