Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc118g00006 ATGGATTTCAAGGGTTTCCTAAACGATTTGCAGGATTGGGAACTTTCTCGAAAACCCAAAGAACCTCCTCCACACACGAACAAAAACCCTCAAAAGGAAAATGGTTCATCTTCTCAAAATACTGCATCGGTCGCCTCAAGGCGGGATACTGTTTCTTTTGATAATGCAAGAAGTACTTCTGGACAGTATAATGATCCATTCAGCCGTGTGGGTAGTAGTTTTGTTTCGGAAGATGTCCCTGATGCTGCGTCCGAGAAAGATCTGGGTAATGAGTATTTCAAGCAGAAAAAATATAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTTTCACCCACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTTAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAAGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACGTCTAGAAAAGAACTTGAGAAATTTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATAAAAAAACAGTATGCTGATGCCAAGTCTTTGTATGACAAAGAAATGCTTCATAAAGTATCTGGAGCTTTGAAAAGCACTGTACAGGGAACTCAAAAAGTAGGGAAATCAGACACGCAAAATAATGGAGGCAGCATCCATCCCATTTCTCTTGTTACTCAAAAGTCTGGGCCAGCTAAGGGTAATGAGCAGAAAATTCCAGCTAAAGAGTCACTCTTAATGGAGGAGGTAGATAGTAAGTCTAATAAAACCATAATCAGGCCTCAGGGTCCAGAGGCAGAGGGTTCTAATGCAAGCAACAATGTGCAGAATGTTAAGAGAAATGAGAAAGGTAGCAAGCAGCACATGCAAGCATCTATTCAACAGCTTGCTTCTCGTGCAGCCTCTCTAGCTACTGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGACTCAACTATTAAAGGCCATATCTCCTCAACAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCATGCTGACTGACATCATCAAGTGTGTTGCATCTTTTTTCACTGAAGAAATGGAGCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTAATGTGCCTTCCATCAACGGATAAAGATGAGTTACGCAAGATCTGGGACAAAGTGTTCTGTGGTGAGGCAACGCCGATGGAGTTTGCTGAGATTCTGGACAACCTGCGATCGAAATACTGTCTTGGGCAGTAG 1350 0.4193 MDFKGFLNDLQDWELSRKPKEPPPHTNKNPQKENGSSSQNTASVASRRDTVSFDNARSTSGQYNDPFSRVGSSFVSEDVPDAASEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATSRKELEKFKESMEDAEFALRLEPNNQEIKKQYADAKSLYDKEMLHKVSGALKSTVQGTQKVGKSDTQNNGGSIHPISLVTQKSGPAKGNEQKIPAKESLLMEEVDSKSNKTIIRPQGPEAEGSNASNNVQNVKRNEKGSKQHMQASIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQTQLLKAISPQQLPKIFKNALSTAMLTDIIKCVASFFTEEMELAVSYMEHLTKVPRFDMIVMCLPSTDKDELRKIWDKVFCGEATPMEFAEILDNLRSKYCLGQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc118g00006 449 SUPERFAMILY TPR-like 79 195 IPR011990 GO:0005515
Stsc118g00006 449 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Stsc118g00006 449 MobiDBLite consensus disorder prediction 1 27 - -
Stsc118g00006 449 MobiDBLite consensus disorder prediction 28 70 - -
Stsc118g00006 449 Gene3D Tetratricopeptide repeat domain 74 180 IPR011990 GO:0005515
Stsc118g00006 449 Pfam Tetratricopeptide repeat 86 114 IPR001440 GO:0005515
Stsc118g00006 449 Pfam Tetratricopeptide repeat 115 145 IPR001440 GO:0005515
Stsc118g00006 449 ProSiteProfiles TPR repeat profile. 149 182 IPR019734 GO:0005515
Stsc118g00006 449 SMART tpr_5 149 182 IPR019734 GO:0005515
Stsc118g00006 449 SMART tpr_5 82 115 IPR019734 GO:0005515
Stsc118g00006 449 SMART tpr_5 116 148 IPR019734 GO:0005515
Stsc118g00006 449 MobiDBLite consensus disorder prediction 217 244 - -
Stsc118g00006 449 MobiDBLite consensus disorder prediction 1 70 - -
Stsc118g00006 449 Pfam Potential Monad-binding region of RPAP3 325 414 IPR025986 -
Stsc118g00006 449 MobiDBLite consensus disorder prediction 217 247 - -
Stsc118g00006 449 PANTHER OS05G0129900 PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc118g00006 Stsc-Chr118 31502 36298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc118g00006 86 178 U-box Gene Family AT3G07370 31.915 4.13e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc118g00006 K23002 - gmx:100784528 592.038