Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc118g00005 ATGTTGGGTTCATCTTCTCAAAATACTGCATCGGTCGCCTCAAGGCGGGATACTGTTTCTTTTGATAATGCAAGAAGTACTTCTGGACAGTATAATGATCCATTCAGCCGTGTGGGTAGTAGTTTTGTTTCGGAAGATGTCCCTGATGCTGCGTCCGAGAAAGATCTGGGTAATGAGTATTTCAAGCAGAAAAAATATAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTTTCACCCACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTTAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAAGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACGTCTAGAAAAGAACTTGAGAAATTTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATAAAAAAACAGTATGCTGATGCCAAGTCTTTGTATGACAAAGAAATGCTTCATAAAGTATCTGGAGCTTTGAAAAGCACTGTACAGGGAACTCAAAAAGTAGGGAAATCAGACACGCAAAATAATGGAGGCAGCATCCATCCCATTTCTCTTGTTACTCAAAAGTCTGGGCCAGCTAAGGGTAATGAGCAGAAAATTCCAGCTAAAGAGTCACTCTTAATGGAGGAGGTAGATAGTAAGTCTAATAAAACCATAATCAGGCCTCAGGGTCCAGAGGCAGAGGGTTCTAATGCAAGCAACAATGTGCAGAATGTTAAGAGAAATGAGAAAGGTAGCAAGCAGCACATGCAAGCATCTATTCAACAGCTTGCTTCTCGTGCAGCCTCTCTAGCTACTGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGACTCAACTATTAAAGGCCATATCTCCTCAACAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCATGCTGACTGACATCATCAAGTGTGTTGCATCTTTTTTCACTGAAGAAATGGAGCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTAATGTGCCTTCCATCAACGGATAAAGATGAGTTACGCAAGATCTGGGACAAAGTGTTCTGTGGTGAGGCAACGCCGATGGAGTTTGCTGAGATTCTGGACAACCTGCGATCGAAATACTGTCTTGGGCAGTAG 1254 0.4195 MLGSSSQNTASVASRRDTVSFDNARSTSGQYNDPFSRVGSSFVSEDVPDAASEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATSRKELEKFKESMEDAEFALRLEPNNQEIKKQYADAKSLYDKEMLHKVSGALKSTVQGTQKVGKSDTQNNGGSIHPISLVTQKSGPAKGNEQKIPAKESLLMEEVDSKSNKTIIRPQGPEAEGSNASNNVQNVKRNEKGSKQHMQASIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQTQLLKAISPQQLPKIFKNALSTAMLTDIIKCVASFFTEEMELAVSYMEHLTKVPRFDMIVMCLPSTDKDELRKIWDKVFCGEATPMEFAEILDNLRSKYCLGQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc118g00005 417 Pfam Tetratricopeptide repeat 54 82 IPR001440 GO:0005515
Stsc118g00005 417 Pfam Tetratricopeptide repeat 83 113 IPR001440 GO:0005515
Stsc118g00005 417 PANTHER OS05G0129900 PROTEIN 21 416 - -
Stsc118g00005 417 MobiDBLite consensus disorder prediction 185 212 - -
Stsc118g00005 417 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Stsc118g00005 417 MobiDBLite consensus disorder prediction 1 33 - -
Stsc118g00005 417 SMART tpr_5 50 83 IPR019734 GO:0005515
Stsc118g00005 417 SMART tpr_5 117 150 IPR019734 GO:0005515
Stsc118g00005 417 SMART tpr_5 84 116 IPR019734 GO:0005515
Stsc118g00005 417 MobiDBLite consensus disorder prediction 185 215 - -
Stsc118g00005 417 SUPERFAMILY TPR-like 47 163 IPR011990 GO:0005515
Stsc118g00005 417 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Stsc118g00005 417 Pfam Potential Monad-binding region of RPAP3 293 382 IPR025986 -
Stsc118g00005 417 Gene3D Tetratricopeptide repeat domain 42 148 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc118g00005 Stsc-Chr118 31441 36298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc118g00005 54 146 U-box Gene Family AT3G07370 31.915 2.99e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc118g00005 K23002 - gmx:100784528 558.91