Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc118g00004 ATGGCAATTAAGGAATCAGTGGTGGAACTTTCATTATCATCACCATCCTCACAACCATCACTACTAGATGCTGTTCAAACCCTTAACAATGCAACTTCTCTCATCAATCGTGAAACCTTCTACCTCAAACTCACTCACTTGCTTGATTCCTCTGGTCTCAGCCTAATTTTCAATGTCCGAGAAACATTGCTGGATTTGTACCTAGTTTACTTGGAGGTGACCACAAGAGGAGGATTCAATCAGGTTAGTCGAGAAAAGAAATGGGGCGAAGTCGCCTCGGCCCTGAGATTGGAAGGAAACATTGCAAGGTTATCTGCTCAAGTTGAAAAGCTCTACTCACAACTTCTTTACCAATTCGAGCAATTGTACTTCTACAGGGCTCCTGCAAAGAGCAGCAAGACCACAGGTTCGCAGAAGAGGAAGCGAAATTCAGAGGCTACTAACTTCTCGTCCGAACCGATAGAAGAAGGAACAGGGCTGGTCAAAGAGGAAGCTCTTATAACTGGAACTACGGATGGAAAAGAAAAGAAAAAGCGCCGAGGCATGGCGCAAGGACAAAGGAGTGCATACCACATCTTCCTGAAGCAAGAATGCACTCGGCTGAAAAGTTCTAGCTCGGCCTCGGACCGAAAGGGTGTTCTCAGCGCAGCGGTCGATGCATGGAGGAATATGTCTCCACTTGAGAAACAGCCATATGTGGATGAATCCAAGAAGAACAAGGAAAAGTTTAAGAATGCAATGATTATTGATGACAATGAGAAGGAAGAGAAGAACATAGCTTCTACTAATGTGTGTAGTGGTGAGTACTACCATGTAACTTCACAACCTGAACCAGATAACAATGGCTACACTCTCAACAACAATAATGCAGCAATAGGCTTAGCTTTGAATGTGACTGAAAAGCTTCCTAAGGATTCCTTGTTACTTTTTGGGTTAGAGCATTATTGTTCAATGGATCTTCCAATCATGGAGCCAAAGTAA 981 0.4353 MAIKESVVELSLSSPSSQPSLLDAVQTLNNATSLINRETFYLKLTHLLDSSGLSLIFNVRETLLDLYLVYLEVTTRGGFNQVSREKKWGEVASALRLEGNIARLSAQVEKLYSQLLYQFEQLYFYRAPAKSSKTTGSQKRKRNSEATNFSSEPIEEGTGLVKEEALITGTTDGKEKKKRRGMAQGQRSAYHIFLKQECTRLKSSSSASDRKGVLSAAVDAWRNMSPLEKQPYVDESKKNKEKFKNAMIIDDNEKEEKNIASTNVCSGEYYHVTSQPEPDNNGYTLNNNNAAIGLALNVTEKLPKDSLLLFGLEHYCSMDLPIMEPK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc118g00004 326 Gene3D High mobility group box domain 168 248 IPR036910 -
Stsc118g00004 326 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 136 258 - -
Stsc118g00004 326 SMART bright_3 35 125 IPR001606 GO:0003677
Stsc118g00004 326 SUPERFAMILY HMG-box 173 247 IPR036910 -
Stsc118g00004 326 SMART ARID_2 31 120 - -
Stsc118g00004 326 ProSiteProfiles ARID domain profile. 34 124 IPR001606 GO:0003677
Stsc118g00004 326 Gene3D - 16 145 IPR036431 GO:0003677
Stsc118g00004 326 MobiDBLite consensus disorder prediction 133 186 - -
Stsc118g00004 326 Pfam ARID/BRIGHT DNA binding domain 37 120 IPR001606 GO:0003677
Stsc118g00004 326 SUPERFAMILY ARID-like 17 126 IPR036431 GO:0003677
Stsc118g00004 326 Pfam HMG-box domain 184 247 IPR009071 -
Stsc118g00004 326 Coils Coil 94 114 - -
Stsc118g00004 326 CDD HMG-box_SF 187 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc118g00004 Stsc-Chr118 23890 27082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc118g00004 36 262 ARID Transcription Factor Family AT3G13350 23.466 1.01e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc118g00004 ARID 4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc118g00004 - - aip:107615356 433.721