Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1185g00001 ATGGAAAAGGAGAAGGAGAAGGAGAAGGAGAAAGGGATGATGAGTACGACCAACAATAACAAGATAGAGTGGGGCCACCAGATGTACCGTGAGGGCCGATACAGGGAAGCATTAGGGTTTTACACTGAAGCCATCACCATCGCTAAAACCAAACCCCACAAGATCGCTCTCCACAGCAACCGCGCTGCTTGCTACCTCAAACTCAACCATTTCAAAAAGGCTGCAGAAGAGTGTACCTCAGTGCTTGAGCTTGATCAAGACCACAGTGGGGCATTGATGCTGAGGGCTCAAACACTAGTCACCCTGAAGGAGTACCATTCGGCGCTTTTTGATGTCAACAGACTTTTAGAGTTGAACCCATCCTCAGAAGTCTATCAAAATCTTCACGCTCGCTTGAAGACACAATTGACACTTGCTCCGATACCGGAGTCAGAAGAGGAGTTTGAGGAGCAGGAAGAAGAATCTGAAGACAATGCCGAGGTGATACTAGAAGGAGAGAATAACAAGGAACCGATGGGAGGCAAGTATCCGGCAACTTCGAACATTAGGATTGATCAGAAGGTTGAGCTCAGGAAAGATATTGTAAGTGCTGAATGTGCTTCCCAAGAAACAAACTCTAAGCTCCTATCCGAAGATGGAAGAGACCAGAACAGTGAGCCTGAGAAGTCCACAGCAGATACTGTAGCACCTAAAGCACTGAAAAGGGAATCAACTGAGCAACAAACCAAAGCATGGCAAACGATTCCCAAACCAAAAGGACATTCAGCGTTGGACTATGCACGGTGGGACAGTGTTGAAGATGATTCTAGCGAAGATGACGACGAGGATGAAGATGAAGAATCTCTACCCCAGTACCGATTCCGTGTAAGAACAGTTGGGGTACGGCCTGTCAAGTGA 897 0.4716 MEKEKEKEKEKGMMSTTNNNKIEWGHQMYREGRYREALGFYTEAITIAKTKPHKIALHSNRAACYLKLNHFKKAAEECTSVLELDQDHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLTLAPIPESEEEFEEQEEESEDNAEVILEGENNKEPMGGKYPATSNIRIDQKVELRKDIVSAECASQETNSKLLSEDGRDQNSEPEKSTADTVAPKALKRESTEQQTKAWQTIPKPKGHSALDYARWDSVEDDSSEDDDEDEDEESLPQYRFRVRTVGVRPVK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1185g00001 298 MobiDBLite consensus disorder prediction 204 284 - -
Stsc1185g00001 298 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 14 298 - -
Stsc1185g00001 298 SUPERFAMILY TPR-like 23 135 IPR011990 GO:0005515
Stsc1185g00001 298 Pfam Tetratricopeptide repeat 30 88 - -
Stsc1185g00001 298 MobiDBLite consensus disorder prediction 265 280 - -
Stsc1185g00001 298 Gene3D Tetratricopeptide repeat domain 4 138 IPR011990 GO:0005515
Stsc1185g00001 298 SMART tpr_5 55 88 IPR019734 GO:0005515
Stsc1185g00001 298 SMART tpr_5 89 122 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1185g00001 Stsc-Chr1185 10033 14462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1185g00001 18 136 Calmodulin-binding Proteins AT3G25230 33.065 4.65e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1185g00001 - - gmx:100792046 393.275