Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1183g00001 ATGGCTCCGAAGGCACCAAGTACGGGTCTTTTTGTTGGAATGAACAAGGGCCATATCGTCACCAAGAAGGAGCTGCCTCCCCGCCCGAGAGATCGCAAAGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAATCTAATTCGCGAGGTTGCTGGTTTTGCGCCATATGAGAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAGGATAAAAGAGCATTGAAGGTTGCCAAGAGGAAGCTCGGAACCCACAAACGTGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTCCTCAGAAAGATGAGGGCTGGTGGAGGCGGTGAAAAGAAGAAGTAA 333 0.4955 MAPKAPSTGLFVGMNKGHIVTKKELPPRPRDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1183g00001 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 106 IPR000509 GO:0003735|GO:0005840|GO:0006412
Stsc1183g00001 110 MobiDBLite consensus disorder prediction 79 110 - -
Stsc1183g00001 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Stsc1183g00001 110 Gene3D 60S ribosomal protein L36 2 105 IPR038097 -
Stsc1183g00001 110 MobiDBLite consensus disorder prediction 1 38 - -
Stsc1183g00001 110 MobiDBLite consensus disorder prediction 87 110 - -
Stsc1183g00001 110 FunFam 60S ribosomal protein L36 1 106 - -
Stsc1183g00001 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1183g00001 Stsc-Chr1183 15174 16870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1183g00001 8 110 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 84.762 8.13e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1183g00001 K02920 - gmx:100785591 211.846