Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1177g00003 ATGCCACCGTCCTTGCACGTCTGTTGCTCTCTCTATACCGTGCTTGCCCAGCTTTTCTCGCCCTCTGCTGGCTGTTCTCGGCGGTCTCTGAGTTGCTGCTCTGTTTCTTGCCATTTGCACCGAAATCCTGGTAGGGCTGGAAGGAATGATGCTGGCATTGATAGCCCTACAGATGGAGAGAAAAAGAGAATGAGGCGTCAATCTCAGTCCAAAACTATCAAGGTGGTGATCAGTTATGCAACAAATATCCCAATTCAAGCAATCACAGATGCATTGCGCGGACAGGATTCAGAGCATTTCCAGGAAGCATTGAGGGTCCTTGACATCATACTGAGGCAGCATGCAGCAAAGCAGGGCTGTCTCCTCGAAAAAAGAGTGCTGAAAAGCCTCCGAATCAGGGTTAATAATATGGAGTACAAAATCAGTGGACTCAGTGAGAATCCCTGCAGGTCTCAATTGTTTTCATTGAAACATGGGAAGGATGAAAATGGTGAACCAAGGAAAATTGAAATCACAGTTTATGATTACTTTAAATGCCATAAGAATATTGAATTGCGCCATGCTAATTTTCCCTGCATCAATGTTGGCAAGCCAAGGCGCCCTACTTATTTTCTAGTAGAGCTATGCACCTTGATCTCATTGCAGAGGTACAGCAATGAAAGGAAAAAAGCATTGGCTAGTGTGTTGAAACAAATTAATCTAATTACCAAGCATTTGGTCATTCAACTTTCCTCAAGCACTCTCTGTAATATCGCAAACATCATCAAATTTGGGACCTTCAACTAA 786 0.4364 MPPSLHVCCSLYTVLAQLFSPSAGCSRRSLSCCSVSCHLHRNPGRAGRNDAGIDSPTDGEKKRMRRQSQSKTIKVVISYATNIPIQAITDALRGQDSEHFQEALRVLDIILRQHAAKQGCLLEKRVLKSLRIRVNNMEYKISGLSENPCRSQLFSLKHGKDENGEPRKIEITVYDYFKCHKNIELRHANFPCINVGKPRRPTYFLVELCTLISLQRYSNERKKALASVLKQINLITKHLVIQLSSSTLCNIANIIKFGTFN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1177g00003 261 ProSiteProfiles PAZ domain profile. 139 213 IPR003100 GO:0005515
Stsc1177g00003 261 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 124 229 - -
Stsc1177g00003 261 CDD PAZ_argonaute_like 124 212 - -
Stsc1177g00003 261 SUPERFAMILY PAZ domain 118 221 IPR036085 GO:0005515
Stsc1177g00003 261 Coils Coil 127 147 - -
Stsc1177g00003 261 Pfam N-terminal domain of argonaute 55 111 IPR032474 -
Stsc1177g00003 261 SMART PAZ_2_a_3 101 237 IPR003100 GO:0005515
Stsc1177g00003 261 Gene3D paz domain 66 218 - -
Stsc1177g00003 261 Pfam PAZ domain 131 231 IPR003100 GO:0005515
Stsc1177g00003 261 MobiDBLite consensus disorder prediction 46 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1177g00003 Stsc-Chr1177 4350 8723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1177g00003 124 222 Eukaryotic Initiation Factors Gene Family AT1G48410 32.710 1.53e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1177g00003 K11593 - rvl:131301483 138.272