Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1177g00002 ATGAAATTGTGGTTCAGGGCTGGAAGGAATGATGCTGGCATTGATAGCCCTACAGATGGAGAGAAAAAGAGAATGAGGCGTCAATCTCAGTCCAAAACTATCAAGGTGGTGATCAGTTATGCAACAAATATCCCAATTCAAGCAATCACAGATGCATTGCGCGGACAGGATTCAGAGCATTTCCAGGAAGCATTGAGGGTCCTTGACATCATACTGAGGCAGCATGCAGCAAAGCAGGGCTGTCTCCTCGAAAAAAGAGTGCTGAAAAGCCTCCGAATCAGGGTTAATAATATGGAGTACAAAATCAGTGGACTCAGTGAGAATCCCTGCAGGTCTCAATTGTTTTCATTGAAACATGGGAAGGATGAAAATGGTGAACCAAGGAAAATTGAAATCACAGTTTATGATTACTTTAAATGCCATAAGAATATTGAATTGCGCCATGCTAATTTTCCCTGCATCAATGTTGGCAAGCCAAGGCGCCCTACTTATTTTCTAGTAGAGCTATGCACCTTGATCTCATTGCAGAGGTACAGCAATGAAAGGAAAAAAGCATTGGCTAGTGTGTTGAAACAAATTAATCTAATTACCAAGCATTTGGTCATTCAACTTTCCTCAAGCACTCTCTGTAATATCGCAAACATCATCAAATTTGGGACCTTCAACTAA 669 0.4111 MKLWFRAGRNDAGIDSPTDGEKKRMRRQSQSKTIKVVISYATNIPIQAITDALRGQDSEHFQEALRVLDIILRQHAAKQGCLLEKRVLKSLRIRVNNMEYKISGLSENPCRSQLFSLKHGKDENGEPRKIEITVYDYFKCHKNIELRHANFPCINVGKPRRPTYFLVELCTLISLQRYSNERKKALASVLKQINLITKHLVIQLSSSTLCNIANIIKFGTFN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1177g00002 222 SUPERFAMILY PAZ domain 79 182 IPR036085 GO:0005515
Stsc1177g00002 222 MobiDBLite consensus disorder prediction 7 28 - -
Stsc1177g00002 222 CDD PAZ_argonaute_like 85 173 - -
Stsc1177g00002 222 Pfam PAZ domain 92 192 IPR003100 GO:0005515
Stsc1177g00002 222 Gene3D paz domain 24 179 - -
Stsc1177g00002 222 Coils Coil 88 108 - -
Stsc1177g00002 222 Pfam N-terminal domain of argonaute 16 72 IPR032474 -
Stsc1177g00002 222 ProSiteProfiles PAZ domain profile. 100 174 IPR003100 GO:0005515
Stsc1177g00002 222 SMART PAZ_2_a_3 62 198 IPR003100 GO:0005515
Stsc1177g00002 222 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 85 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1177g00002 Stsc-Chr1177 4350 8723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1177g00002 85 183 Eukaryotic Initiation Factors Gene Family AT1G48410 32.710 1.08e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1177g00002 K11593 - rvl:131301483 138.272