Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1175g00001 ATGGCCTCTTCAAGCTATTCGAGTTCACCCTGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCGGATTGCATCTTCGCGCCGTATTTCCCACCGGAGGAGCCTCAAAAGTTTGCGAACGTTCACAAGATCTTTGGCGCGAGCAACGTGAGCAAGCTTCTGAATGAGGTGCAGCCCCATCAGAGGGAGGATGCAGTGAACTCTCTGGCGTATGAGGCCGAGGCGCGGATTAAGGATCCAGTTTACGGCTGTGTTGGGGCCATTTCAGTGCTCCAACGGCAGGTGATTAGGCTCCAAAAGGAACTTGATGCCACCAATGCAGATCTGATCCGCTATACGTGTAATGAAATGCCAACGTTGCAAGATGGGATGAGAAGAATTGGTGAAGGTTCCACTCTTGCTCATCATTCTCCTACTGCTGCTTATTATTATCCATCTCCTTGGAGCAATGATCCTTGTGGGGATGCTGGGTTTCACACAGGAGGTG 490 0.5102 MASSSYSSSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTLQDGMRRIGEGSTLAHHSPTAAYYYPSPWSNDPCGDAGFHTGG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1175g00001 163 Coils Coil 89 109 - -
Stsc1175g00001 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Stsc1175g00001 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 117 - -
Stsc1175g00001 163 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1175g00001 Stsc-Chr1175 4487 4976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1175g00001 4 113 AS2 family AT3G27650 84.545 6.19e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc1175g00001 LOB 8.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1175g00001 - - gmx:100306630 285.034