Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1174g00002 ATGGCACTTTCACTTGCTTCTTCTTCTTTTTCTTCAGCACCTGCCACTCATCGATACGATGTTTTCATCAGCTTTAGAGGGGAGGACGTGCGTCATGGATTCCTCAGCCATCTTCAAGCCGCTCTCCGGGAAAACCAAATCAAAACATTCAGAGACGAGTCAGACGACGGCATGGAGAAAGGAGCTGCCATCTGGGACACGCTTGTTGAGGCCATCAGAAACGCAAAGTTGTTTGTTGTTATCTTCTCAAAAAACTATGCTTCCTCTAGGTGGTGCTTGAAAGAGCTCGTTCAGATCATGGAACGCAAGAATAACAAGAATGAGCATGTTACTGTGATTCCAGTGTTCTACGGAACACAGCCCACAGATATTCGCAAGCAGACCGGAACTTACCACACAGTATTCGCTAAGCACGAGGCATCTTTGGAGGACCCTTGCCATGTGCAACAATGGAGGACTGCACTCGCTCAAGCTGCTGATCTTTCTGGCTTCTCCTTCCATGAGCACAGGGATGATGAAGCTACGCTAACTGGTAAAATTGTAAAAGCAATTTTGCCACATTGTGTGAATATCAAGTACTACATAGATGGATGCAACATACCTTTTATTTGTAACAGAAACTATACCCAGGTTGAATATCTGTTGATGAGACGCGAGTCGGAGGTGGTTCTTGTGATTGGGATATGGGGTATGGGCGGTATTGGTAAGTCTACCATTGCTGAGAGGCTCTTCAATAAGTACTCTTGTGTTTATGAAGGCTCTTGCTTCTTGACAAATTCAAGAGAATTGGGAAGTCCATGTCTCGATAACATATGTAAGGAGATTTTTTCCCGATTATCAAATCAATATCTTCATATTGTCAATATTAGAGTACTAGACCCTCGCATTGTAAGTGAACTCAAGCACAAGAGGGCTTTGATTGTACTGGATGATGTGGTTGATTCGTCAATTGCAATTGACTTGGTTCCATGTTTGCGCAATTGTCTATGTCCTGGTAGCATAGTCGTTTTGACAACAAGGGACAGGAATGTGCTCACGAGTGGAGGAGTTGATGATGAACACATTCGTGAAATCAAGAAAATGAGTTATGGAGACTCCCATAAACTTTTTACCCATTATGCCTTTTCTGATTCACATCCCAAACAAGGGTATGATGAGCTAACCCCTAGAGCCATAGATTTTGCTTCCGGCAATCCATTGGCTTTGAAAATTTTGGGATCATTTCTTCGCGGCAAAAGTGTAAGTGAATGGGACAGTGCATTGAAGAAATTAAGAAAGTTTCCCGATAAAAATATTCAGCAAGTGTTGAGGTTGAGTTATGATGGATTGGATGACGAAGAGAAAAATATTCTTTTGGACATTGCTTGTTTACTCTGGGAGTATGAAGTAGGTCTTGTGATAGGAATATTGAATTCTTGTGAGTTTTCTGCAGAGATAGGAATAAAAAACTATTAA 1455 0.4186 MALSLASSSFSSAPATHRYDVFISFRGEDVRHGFLSHLQAALRENQIKTFRDESDDGMEKGAAIWDTLVEAIRNAKLFVVIFSKNYASSRWCLKELVQIMERKNNKNEHVTVIPVFYGTQPTDIRKQTGTYHTVFAKHEASLEDPCHVQQWRTALAQAADLSGFSFHEHRDDEATLTGKIVKAILPHCVNIKYYIDGCNIPFICNRNYTQVEYLLMRRESEVVLVIGIWGMGGIGKSTIAERLFNKYSCVYEGSCFLTNSRELGSPCLDNICKEIFSRLSNQYLHIVNIRVLDPRIVSELKHKRALIVLDDVVDSSIAIDLVPCLRNCLCPGSIVVLTTRDRNVLTSGGVDDEHIREIKKMSYGDSHKLFTHYAFSDSHPKQGYDELTPRAIDFASGNPLALKILGSFLRGKSVSEWDSALKKLRKFPDKNIQQVLRLSYDGLDDEEKNILLDIACLLWEYEVGLVIGILNSCEFSAEIGIKNY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1174g00002 484 Gene3D - 14 192 IPR035897 -
Stsc1174g00002 484 ProSiteProfiles TIR domain profile. 17 188 IPR000157 GO:0007165
Stsc1174g00002 484 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 189 - -
Stsc1174g00002 484 Gene3D - 199 350 IPR027417 -
Stsc1174g00002 484 Pfam NB-ARC domain 210 436 IPR002182 GO:0043531
Stsc1174g00002 484 Pfam TIR domain 19 184 IPR000157 GO:0007165
Stsc1174g00002 484 PRINTS Disease resistance protein signature 299 313 - -
Stsc1174g00002 484 PRINTS Disease resistance protein signature 225 240 - -
Stsc1174g00002 484 PRINTS Disease resistance protein signature 395 409 - -
Stsc1174g00002 484 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 481 IPR044974 GO:0006952
Stsc1174g00002 484 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Stsc1174g00002 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 454 IPR027417 -
Stsc1174g00002 484 FunFam Disease resistance protein (TIR-NBS-LRR class) 354 444 - -
Stsc1174g00002 484 Gene3D - 353 444 IPR042197 -
Stsc1174g00002 484 SMART till_3 18 161 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1174g00002 Stsc-Chr1174 14417 18260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1174g00002 15 482 WRKY Transcription Factor Family AT4G12020 26.891 4.84e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1174g00002 - - aip:107614881 662.914