Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc116g00004 ATGGCAATGAGGGCGGCAGCGTCGGCTCCTCGAGGTTTGCGGCGGTTCTTCTGCACAAACACCACAAAACCTTCTTTGAGCTTCCCCTTCATTTCCCCGCCATCTTCGGGGGCGCAGCCAGCTCGGCCTGTGGCGGAACCCAGCACCAACCTCTTCGTCTCTGGGCTTAGCAAACGGACTACTTCAGAGAAATTGAGAGACGAATTTTCAAAGTTTGGTGAAGTTGTTAACGCAAGGGTGGTAACTGACCGAGTATCAGGTTACTCTAAGGGGTTTGGTTTTGTGAATTATGCCACTCTAGAAGATGCTGCAAAGGGCATCGAGGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATCTTCGCTGAGTACGCAAGGCCAAGACCTCCACCCGGACAACCCATAAATAATATGCCACCTCAATATGGGCGGCAGTGA 438 0.5205 MAMRAAASAPRGLRRFFCTNTTKPSLSFPFISPPSSGAQPARPVAEPSTNLFVSGLSKRTTSEKLRDEFSKFGEVVNARVVTDRVSGYSKGFGFVNYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPINNMPPQYGRQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc116g00004 145 SMART rrm1_1 50 123 IPR000504 GO:0003723
Stsc116g00004 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Stsc116g00004 145 SUPERFAMILY RNA-binding domain, RBD 29 143 IPR035979 GO:0003676
Stsc116g00004 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Stsc116g00004 145 Gene3D - 30 133 IPR012677 -
Stsc116g00004 145 PANTHER NUCLEOLAR PROTEIN 8 32 133 - -
Stsc116g00004 145 FunFam RNA recognition motif-containing protein 29 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc116g00004 Stsc-Chr116 43613 46193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc116g00004 32 129 Eukaryotic Initiation Factors Gene Family AT4G34110 33.673 9.04e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc116g00004 - - psat:127105180 218.394