Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1167g00004 ATGGAACACAAGGACAGGGAAATACTTTGTTTATTTATTGGTTTCTGTTTCCTCTTCGTTCTAGTCAATTTCTCCGACATTCTCTTGTGTCTCTTGTTGAAAGCTTACCGTGTCGTCACCGGGTGTCACTCCTCATCAGAAGTTAACCCTTCAAGCACTCCTAATGATCTGCAGCATCATCAAGTTGTCATTGACTCATTCCCCGACACAGCTTCTCTACAAAGCGACGGCTTAGACACCTCTGTGATAAGTTCTCTTCCGGTGTCGGAGTTCGATAATGTGGGGGAGCACAAGTCTATTAATGCAGATTGTGTCATTTGCCTGGGGGATTTTGAAAAAGGGGAGAAGCTTAGGCTGCTTCCTAAATGTGGTCACGCTTTCCATGTTTCTTGCATAGATGCATGGTTTCAGTCTCATTCCAACTGCCCAATTTGCAGGTCCCAAGTCCATTATGTTGAAGATGGTAACTCAGAGTATTCGGCATCTTCGTATCCATTGTTGGAAACTCTGAGGACGGAAGACATTTCCCGAGACAGCGATGCAATAATCCGATCGGTTCGCTCCGAGATCATACAAAGCTGGGCAAATAGACCTCACACACTCTAG 606 0.4521 MEHKDREILCLFIGFCFLFVLVNFSDILLCLLLKAYRVVTGCHSSSEVNPSSTPNDLQHHQVVIDSFPDTASLQSDGLDTSVISSLPVSEFDNVGEHKSINADCVICLGDFEKGEKLRLLPKCGHAFHVSCIDAWFQSHSNCPICRSQVHYVEDGNSEYSASSYPLLETLRTEDISRDSDAIIRSVRSEIIQSWANRPHTL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1167g00004 201 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Stsc1167g00004 201 Pfam Ring finger domain 103 146 IPR001841 -
Stsc1167g00004 201 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 151 IPR044675 -
Stsc1167g00004 201 CDD RING-H2_EL5-like 103 146 - -
Stsc1167g00004 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
Stsc1167g00004 201 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Stsc1167g00004 201 SMART ring_2 104 145 IPR001841 -
Stsc1167g00004 201 SUPERFAMILY RING/U-box 103 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1167g00004 Stsc-Chr1167 6365 6970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1167g00004 31 154 C3H Transcription Factor Family AT5G17600 40.800 1.06e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1167g00004 - - adu:107461568 325.479