Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc115g00002 ATGTTCCTCTCCCACCGCCGAGCCGATGCACTCCGCTACACCTCCTCAGCCGCTACAACTGCTACAGACGCCGACATTGGGCCGCCCGGGGTTGTTTCCAGAGTTTCTTCCGTCGCCGCTGGACACTCTTCCTCCGCATCTCACTTGCTCTCCCAAGCCTCTTCTTGGCCTGCTGCCATCGCCGCTGCTGCCGCTGCCGCCAGTATTGGCTCCTCTCCGCTCGAAATGAAACGCTCTACTGAATCACTCTACCATCCAACCATTTTGGGTATCCCAAACACAGTTGGGCAAAGCGAAGCTTGGTATTCTACAGACACACTAGCTAAGCGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCCCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGACGGTGGAATCCCAGATTGGAAAGAGATTCCAACCACGGTTTCGGGTGAAACACTTCCTGAGAGAATAGGAGAACCAGACTGTCCATACTTTATTAAAACTCAGAGATGCAAATTTGGTTCGAAGTGCAAGTTTAATCATCCAAAAGGTTCCTCTGAAACTGCAGATACTGGCTTACCTGAGAGGCCATCAGAGGCCCCCTGTGCGTTCTATATGAAGACTGGGAGATGTAAGTTTGGTTCTGCATGTAAATTTCATCACCCGAAAGGCATCCAGATTCAGATGGCTGATGAACTGAGTTATAACGCTGAACAGACACAAGCAAATTCCATAATGGAAGGAGCAACAGGAGATACACAATCTTTCTTATCTCCACTATTGCAAAATAGCAAAGGCCTTCCAGGGGAAGTTGATTGCCCATTCTACATGAAAACTGGAAGCTGCAAGTATGGTGGTACATGTCGCTACAACCATCCAGACAGGAATGCAATTTATCCGCCAGTTGCTGCATTTGGTTCTTCTATTGGATCTATAAATCCTTCTGTACCTATTTATCAAGCATATGACCCAAGGTTGTCAAATCCAATGTCTCAACTTGGAGTGGCAGAAATTGTGTATCCTCAGCGTCCGGGACAGATTGAATGTGATTTCTATATGAAAACTGGTGAGTGCAAATTTGGGGAAAGATGCAAGTACCATCACCCTCTTGACCGATCAGCTTCATCAAACACTAAGCTCACTCCCGCAGGATTACCTAGGAGAGAGGGTGTTGGCACCTGTCCATATTACATGAAAACTAGCACTTGCAAGTTTGGTGCTACCTGCAAGTTCGACCACCCACCACCCGGAGAAGTTATCGAGATTGCAAAATCGCAAGGAACATCTGCAACTGATGGAGGGGAAGCAATTTCATGA 1380 0.4725 MFLSHRRADALRYTSSAATTATDADIGPPGVVSRVSSVAAGHSSSASHLLSQASSWPAAIAAAAAAASIGSSPLEMKRSTESLYHPTILGIPNTVGQSEAWYSTDTLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEIPTTVSGETLPERIGEPDCPYFIKTQRCKFGSKCKFNHPKGSSETADTGLPERPSEAPCAFYMKTGRCKFGSACKFHHPKGIQIQMADELSYNAEQTQANSIMEGATGDTQSFLSPLLQNSKGLPGEVDCPFYMKTGSCKYGGTCRYNHPDRNAIYPPVAAFGSSIGSINPSVPIYQAYDPRLSNPMSQLGVAEIVYPQRPGQIECDFYMKTGECKFGERCKYHHPLDRSASSNTKLTPAGLPRREGVGTCPYYMKTSTCKFGATCKFDHPPPGEVIEIAKSQGTSATDGGEAIS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc115g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 288 316 IPR000571 GO:0046872
Stsc115g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 409 437 IPR000571 GO:0046872
Stsc115g00002 459 SUPERFAMILY CCCH zinc finger 220 244 IPR036855 GO:0046872
Stsc115g00002 459 FunFam zinc finger CCCH domain-containing protein 37 362 450 - -
Stsc115g00002 459 PANTHER PROTEIN PHOSPHATASE RELATED 112 259 - -
Stsc115g00002 459 SMART c3hfinal6 364 391 IPR000571 GO:0046872
Stsc115g00002 459 SMART c3hfinal6 288 315 IPR000571 GO:0046872
Stsc115g00002 459 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Stsc115g00002 459 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Stsc115g00002 459 SMART c3hfinal6 409 436 IPR000571 GO:0046872
Stsc115g00002 459 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Stsc115g00002 459 SUPERFAMILY CCCH zinc finger 126 152 IPR036855 GO:0046872
Stsc115g00002 459 SUPERFAMILY CCCH zinc finger 365 392 IPR036855 GO:0046872
Stsc115g00002 459 SUPERFAMILY CCCH zinc finger 413 436 IPR036855 GO:0046872
Stsc115g00002 459 SUPERFAMILY CCCH zinc finger 293 316 IPR036855 GO:0046872
Stsc115g00002 459 Gene3D - 216 324 - -
Stsc115g00002 459 SUPERFAMILY CCCH zinc finger 182 205 IPR036855 GO:0046872
Stsc115g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Stsc115g00002 459 Gene3D - 124 215 - -
Stsc115g00002 459 Gene3D - 363 450 - -
Stsc115g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Stsc115g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Stsc115g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 364 392 IPR000571 GO:0046872
Stsc115g00002 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 244 IPR000571 GO:0046872
Stsc115g00002 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 290 314 IPR000571 GO:0046872
Stsc115g00002 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 204 IPR000571 GO:0046872
Stsc115g00002 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 367 390 IPR000571 GO:0046872
Stsc115g00002 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Stsc115g00002 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 436 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc115g00002 Stsc-Chr115 11341 19841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc115g00002 394 448 C2H2 Transcription Factor Family AT3G02830 39.286 7.75e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc115g00002 zf-CCCH 6.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc115g00002 - - pvu:PHAVU_011G180700g 656.366