Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1158g00003 ATGGTTCTAATTTATGTTTTGCGGTTCTTTTTGGTTTCTTATCTACATCTCTACTGGGGTGTGAATGTGAATGGCCACCATGATAATAAGTGTCCAGACTCGTTTGATTGTGGAAGTCTAGGCTCGTTTCACTTCCCTTTAACCACCGCACAACTTCCTCACTGTGGTGCACTGGCCATCTATGGTTGCGACGATCAAAAGCAACAGTCCCATTACATACTCATCGGACGCAAGAAGTTTCAAGTCAAACGAACTGGGGAACAAAGTCAAGATTGGTCCCCTTCCAGTCTTGTTTACCTTGACGATGATCTCTTGAAATATTCGGAATCAGAAAGTTGTGACGCCTTTGCCCATAATATTACACTCCCGTCTGTCTCTCCTCTCATAGGTTTCTTTACTATCTATAACAACGTTACTTTTTTCAGATGCAAGACCAAACTCAACGTCAGCACGCCGCGAACTTACTTTAAAAATACAAGCTGTGGCTATGACATCTTTTTCGGCCCTCCTAATTCGGATGAAGATGCGTCTCTGTCAAAGAACTTTTCCAAAGCAGGATGCTCAACTGTTCAGCTTCCTGCTGCTAATAACCTTCCATTATCTACAAATCCATTTGCGTTCTTAACTGCTGAAATTCCCATCAAATTCAATCCATCAGTTAAATGTGCCCAGTGTCGTCGTGACAGAAACAGAGGGGCTCCGCATGGCCGATGTCTCCTTGACAGGGATGGAAAACCTTACTGCGCTACAAGGAAGGACAAAAAATGGACTCGGATGATAGCACTGGCACTAGGTTTAGGTCTTGGTCCTTGGATTATTGTTGGGTTGATCCTCATTTTAAGGAACCGGAAACGGAAGCAGAGTACCGCACATGTCCAACTCCAATCAATGATGGCTTCTGCTGATTCCAGCCAAAGTCCTGATGCACAGACGGACAGGATCTTCTTTGGGGTGCCGATATACTCTTATAAGGAGCTTCAAGAAGCAACCAACAACTTTGACAACACTAGAAAACTGGGAGATGGAGGCTTTGGCACTGTTTACTATGGAAAACTTGAAGATGGAAGAGAAGTAGCAGTCAAACACCTATTTGATCACAACTACAGGAGGGTGGAGCAGTTCATGAATGAGATAGAGATCCTTACTCGCTTGCGCCACCGAAATCTCGTGTCCCTCTATGGCTGCACTTCACGTCACAGCCATGAACTACTTCTTGTGTATGAATACATTCCAAATGGCACGGTTGCTTCCCATCTCCATGGTAATTTAGCAAGGGCTGGTTTACTCACTTGGCCTATTCGAATGCAAATAGCCATAGAGGCTGCTACTGCATTGGCCTTTCTCCATGCTTCAGATATCATCCACCGTGATGTGAAAACCAACAACATTCTACTTGACATTAATTTTTCAGTTAAGGTAGCAGACTTTGGTCTTTCAAGACTGTTCCCAAACGATGTCACCCACGTCTCCACGGCACCACAAGGAAGTCCTGGTTACCTTGACCCTGAATATTTTCAGTTCTACCAACTCACTGCTAAGAGTGATGTATATAGTTTCGGGGTTGTGCTCATGGAGCTGATATCATCTATGCCAGCAGTTAATCCAACCAGGGAAAGAGATGAAATTAACTTGGCGAATCTAGCCGCAAAGAAGATTCAGAAGGGTGAGTTGAGTGAGCTGGTGGACCCATGTCTTGGTTTTGATACAAACCAAGAAGTTAAGAGGAAGATAATTATGGTGGCAGAATTGGCTTTCCAGTGTGTGCAAGTGGACAAAGAGCTAAGACCTTCTATGGATGGAGTTCTGAATGAACTCAAGAAAATTGGAAGTGCAAATTCTGAGCCTGAGCATGTAGATAAAGGAGATGATGGCACTGTGATCTTACACAGTGAATTAAATCCACCATCATCATCATTAGGTTTGCAGGATTGGAATCAAGTTAGATTCTTAATGAGAGAGAAGCTAAGGTCTTCACCAAACTCCTTGACTGAGAAATGGTCAAGTGAATCTACTGCGCCTAATGCTAGTGCTTAG 2034 0.4371 MVLIYVLRFFLVSYLHLYWGVNVNGHHDNKCPDSFDCGSLGSFHFPLTTAQLPHCGALAIYGCDDQKQQSHYILIGRKKFQVKRTGEQSQDWSPSSLVYLDDDLLKYSESESCDAFAHNITLPSVSPLIGFFTIYNNVTFFRCKTKLNVSTPRTYFKNTSCGYDIFFGPPNSDEDASLSKNFSKAGCSTVQLPAANNLPLSTNPFAFLTAEIPIKFNPSVKCAQCRRDRNRGAPHGRCLLDRDGKPYCATRKDKKWTRMIALALGLGLGPWIIVGLILILRNRKRKQSTAHVQLQSMMASADSSQSPDAQTDRIFFGVPIYSYKELQEATNNFDNTRKLGDGGFGTVYYGKLEDGREVAVKHLFDHNYRRVEQFMNEIEILTRLRHRNLVSLYGCTSRHSHELLLVYEYIPNGTVASHLHGNLARAGLLTWPIRMQIAIEAATALAFLHASDIIHRDVKTNNILLDINFSVKVADFGLSRLFPNDVTHVSTAPQGSPGYLDPEYFQFYQLTAKSDVYSFGVVLMELISSMPAVNPTRERDEINLANLAAKKIQKGELSELVDPCLGFDTNQEVKRKIIMVAELAFQCVQVDKELRPSMDGVLNELKKIGSANSEPEHVDKGDDGTVILHSELNPPSSSLGLQDWNQVRFLMREKLRSSPNSLTEKWSSESTAPNASA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1158g00003 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Stsc1158g00003 677 SUPERFAMILY Protein kinase-like (PK-like) 316 607 IPR011009 -
Stsc1158g00003 677 Gene3D Phosphorylase Kinase; domain 1 304 409 - -
Stsc1158g00003 677 Gene3D Transferase(Phosphotransferase) domain 1 410 619 - -
Stsc1158g00003 677 FunFam Wall-associated receptor kinase-like 20 410 618 - -
Stsc1158g00003 677 MobiDBLite consensus disorder prediction 658 677 - -
Stsc1158g00003 677 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Stsc1158g00003 677 SMART serkin_6 333 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1158g00003 677 ProSiteProfiles Protein kinase domain profile. 333 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1158g00003 677 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 670 IPR044652 GO:0004672
Stsc1158g00003 677 FunFam receptor-like protein kinase FERONIA 295 409 - -
Stsc1158g00003 677 Pfam Protein tyrosine and serine/threonine kinase 336 604 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1158g00003 Stsc-Chr1158 2979 5818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1158g00003 31 677 Receptor kinase-like Gene Family AT1G25390 44.597 1.79e-161 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc1158g00003 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1158g00003 - - aip:107616167 874.389