Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1158g00002 ATGGAGGCTTTGGCACTGTTTACTATGGTATGTTACCATCACAATCATGAACCACCCTTCTTTCTTTCAATAATTGATTGGTTGACGCTACAAATGTTAGGAAAACTCAAAGATGGACGTGAAGTTGCCATTAAGCGCATGTTCGAGCACAACTATAGGCGTGTAGAACAATTCATGAACGAAGTTAAGATCCTAACCCGTTTGCGACATACTAATCTTGTGTCCCTCTACTATGGCTGCACTTCACGTCACAGCCATGAACTCTTGCTCGTCTATGAATTCATTTCAAACGGCACAGTGGCCAGTCATCTCCATGATGGATCAGCAAGGCCTGGCTTTCTGCCTTGGCATATCCGAATGAAAGTTGCCATAGAGACAGCAAAAGCATTGGCTTATCTCCATGCTTCGGACATCATTCACCGCGATGTAAAGACCAACAACATCCTGCTGGACAACAATTTTTGTGTTAAGGTTGCAGATTTCGGGATGTCAAGACTGTTCCCGAATGATGTGACACATGTATCCACAGCTCCACAAGGCACCCCTGGCTATCTTGATCCGGAATATCACCAATTCTACCAGCTAACAAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTGCTCATTGAGTTAATATCATCCATGCCAGCACTTGATATGAGTAGGCATAAGGATGAGATTAGCTTGGCAAGTCTAGCCACAAACAAGATTAGCAAAGGTGAAGTTGCAGAGTTGGTTGATTCATCCCTTGGTTTTGAGACAGATAGTGAAGTTAGAAGGGAAGTAAATATGGTAGCTGAATTGGCATTTCAGTGTTTGCAAAGGGACAGGGACTCGAGGCCCTCAATGGATGCGGTGTTGGAAGCACTCAGGAGCACACAGTGTGGAAAGGACGAGGGTGAGGTGTAA 909 0.4444 MEALALFTMVCYHHNHEPPFFLSIIDWLTLQMLGKLKDGREVAIKRMFEHNYRRVEQFMNEVKILTRLRHTNLVSLYYGCTSRHSHELLLVYEFISNGTVASHLHDGSARPGFLPWHIRMKVAIETAKALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGMSRLFPNDVTHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSMPALDMSRHKDEISLASLATNKISKGEVAELVDSSLGFETDSEVRREVNMVAELAFQCLQRDRDSRPSMDAVLEALRSTQCGKDEGEV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1158g00002 302 PIRSF ILK 35 299 - -
Stsc1158g00002 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Stsc1158g00002 302 Gene3D Transferase(Phosphotransferase) domain 1 96 300 - -
Stsc1158g00002 302 SUPERFAMILY Protein kinase-like (PK-like) 33 290 IPR011009 -
Stsc1158g00002 302 SMART serkin_6 27 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1158g00002 302 Pfam Protein tyrosine and serine/threonine kinase 37 290 IPR001245 GO:0004672|GO:0006468
Stsc1158g00002 302 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 33 297 IPR044652 GO:0004672
Stsc1158g00002 302 Gene3D Phosphorylase Kinase; domain 1 32 95 - -
Stsc1158g00002 302 FunFam Wall-associated receptor kinase-like 20 95 301 - -
Stsc1158g00002 302 ProSiteProfiles Protein kinase domain profile. 1 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1158g00002 Stsc-Chr1158 129 2035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1158g00002 34 294 Receptor kinase-like Gene Family AT1G25390 69.084 1.96e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc1158g00002 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1158g00002 - - aprc:113871893 422.935