Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1158g00001 ATGAGTTTGGCTATGAAGTTAGGACTGGGTATTGGACTCCCGGTATTAGTTATAATCGGCATGTTGCTGATTCTATGGAATTGGAAAGCAAGATGCGGTGTTGGTTTGCACTCAAAAGCAGAACCAGAAAGCTGCAGTGCCTTCTTTGGGGTCCCTGTCTTCTCCTATAAGGATCTTGAACTCGCAACAAAATATTTTGATCGTTCCAGAGTACTTGGTCATGGAGGCTTTGGCACTGTTTACTATGGAAAACTCAAAGATGGACGTGAAGTTGCCATTAAGCGCATGTTCGAGCACAACTATAGGCGTGTAGAACAATTCATGAACGAAGTTAAGATCCTAACCCGTTTGCGACATACTAATCTTGTGTCCCTCTACTATGGCTGCACTTCACGTCACAGCCATGAACTCTTGCTCGTCTATGAATTCATTTCAAACGGCACAGTGGCCAGTCATCTCCATGATGGATCAGCAAGGCCTGGCTTTCTGCCTTGGCATATCCGAATGAAAGTTGCCATAGAGACAGCAAAAGCATTGGCTTATCTCCATGCTTCGGACATCATTCACCGCGATGTAAAGACCAACAACATCCTGCTGGACAACAATTTTTGTGTTAAGGTTGCAGATTTCGGGATGTCAAGACTGTTCCCGAATGATGTGACACATGTATCCACAGCTCCACAAGGCACCCCTGGCTATCTTGATCCGGAATATCACCAATTCTACCAGCTAACAAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTGCTCATTGAGTTAATATCATCCATGCCAGCACTTGATATGAGTAGGCATAAGGATGAGATTAGCTTGGCAAGTCTAGCCACAAACAAGATTAGCAAAGGTGAAGTTGCAGAGTTGGTTGATTCATCCCTTGGTTTTGAGACAGATAGTGAAGTTAGAAGGGAAGTAAATATGGTAGCTGAATTGGCATTTCAGTGTTTGCAAAGGGACAGGGACTCGAGGCCCTCAATGGATGCGGTGTTGGAAGCACTCAGGAGCACACAGTGTGGAAAGGACGAGGGTGAGGTGTAA 1056 0.4489 MSLAMKLGLGIGLPVLVIIGMLLILWNWKARCGVGLHSKAEPESCSAFFGVPVFSYKDLELATKYFDRSRVLGHGGFGTVYYGKLKDGREVAIKRMFEHNYRRVEQFMNEVKILTRLRHTNLVSLYYGCTSRHSHELLLVYEFISNGTVASHLHDGSARPGFLPWHIRMKVAIETAKALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGMSRLFPNDVTHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSMPALDMSRHKDEISLASLATNKISKGEVAELVDSSLGFETDSEVRREVNMVAELAFQCLQRDRDSRPSMDAVLEALRSTQCGKDEGEV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1158g00001 351 ProSiteProfiles Protein kinase domain profile. 66 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1158g00001 351 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 38 346 IPR044652 GO:0004672
Stsc1158g00001 351 SMART serkin_6 66 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1158g00001 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Stsc1158g00001 351 Gene3D Phosphorylase Kinase; domain 1 38 143 - -
Stsc1158g00001 351 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Stsc1158g00001 351 Pfam Protein tyrosine and serine/threonine kinase 69 339 IPR001245 GO:0004672|GO:0006468
Stsc1158g00001 351 Gene3D Transferase(Phosphotransferase) domain 1 144 349 - -
Stsc1158g00001 351 SUPERFAMILY Protein kinase-like (PK-like) 44 339 IPR011009 -
Stsc1158g00001 351 FunFam Wall-associated receptor kinase-like 20 144 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1158g00001 Stsc-Chr1158 1 2035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1158g00001 5 343 Receptor kinase-like Gene Family AT1G25390 63.401 3.78e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc1158g00001 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1158g00001 - - gmx:100790240 489.96