Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1156g00001 ATGGGAAGACAACCTTGTTGTGAAAAGGTTGGTCTGAAGAGAGGTCCATGGACTATTGAAGAAGATCACAAGCTCATGAACTTTATCCTCAATAATGGCATCCATTGCTGGAGAATGGTTCCCAAGCTTGCAGGTTTGCTGAGATGTGGAAAGAGTTGTAGATTGAGGTGGATTAATTATCTGAGGCCTGACCTCAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATTATACAACTACATTCACGTCTTGGTAACAGGTGGTCTAAGATTGCTTCCCACTTTCCTGGGAGGACAGACAACGAGATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGTTGAAGCTCCTTGGATTAGATCCCGTCACACACAAGAAAGTCGAACCGGTGGAACAAATTGATGGAAACAAAGCCAACCTACACTCATCTATCTCACAAAAATCTGAAGAAAATGATGTACAAGAGATTAAATGCATGGACAATAGTTCGGCCGGCGCCGAGGAGACTAAAAAAAGAGAAGAAATGAAGGTGATGAACTTGGATGATCATGATGATGATAATGCTGAGATTTTGAACAACTTTGACATGTTGTGTTCAAAATTGGACATGGGAATGGGATCATGGATTGAACAAGAAATCATTAATAATAATGATAACAACAACAGCAGTACTAGTTCACACTGCAGTTCTTCTTCCTCTGTTTCAATGGATGAGAACTATTCTAGTAACTTTTCTTCTAAAGGTGAATCCAAGAATGAGCATGATCAGGATAATTCGTTACAGCAATGGATTGAAAATATGGATTCAATTCTCTCATGGGATGGCTTCAATGCCCTTGATCAAGATTTGTTTCTCCTATAG 867 0.3991 MGRQPCCEKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKKVEPVEQIDGNKANLHSSISQKSEENDVQEIKCMDNSSAGAEETKKREEMKVMNLDDHDDDNAEILNNFDMLCSKLDMGMGSWIEQEIINNNDNNNSSTSSHCSSSSSVSMDENYSSNFSSKGESKNEHDQDNSLQQWIENMDSILSWDGFNALDQDLFLL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1156g00001 288 MobiDBLite consensus disorder prediction 218 249 - -
Stsc1156g00001 288 FunFam MYB transcription factor 68 129 - -
Stsc1156g00001 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc1156g00001 288 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Stsc1156g00001 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc1156g00001 288 Gene3D - 11 67 - -
Stsc1156g00001 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc1156g00001 288 CDD SANT 16 61 IPR001005 -
Stsc1156g00001 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc1156g00001 288 MobiDBLite consensus disorder prediction 218 259 - -
Stsc1156g00001 288 SMART sant 66 114 IPR001005 -
Stsc1156g00001 288 SMART sant 13 63 IPR001005 -
Stsc1156g00001 288 FunFam MYB transcription factor 11 67 - -
Stsc1156g00001 288 Gene3D - 69 178 - -
Stsc1156g00001 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 257 - -
Stsc1156g00001 288 CDD SANT 70 110 IPR001005 -
Stsc1156g00001 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc1156g00001 288 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1156g00001 Stsc-Chr1156 2130 4064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1156g00001 1 142 MYB Transcription Factor Family AT5G16600 71.724 2.92e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc1156g00001 Myb_DNA-binding 6.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1156g00001 K09422 - gmx:100783231 370.163