Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1141g00001 ATGAACAACAACAACATTGCAAATGTCTTTGCTGATGAGAATTATTTATGTGGAGGATTTATGTGGCCAAATTGCAATCAAGAATCAAGCTTTGTTGATGGACTATTCTTTGCAAATGATGAAGAAGCTTTGAAGTGGAGAAGCATGCCCCAAAACCCTACATTGTGCAAGAAAGAAAACGTGCAAATTTTGAACAAGAGTGCTAAAGGATCAAAGGGTACTAAGAAAGTGTCTTATGATGCTGGTTGGATAAAAGGACAATGGAGTGAAGAAGAAGACAGGAATTTGATTAAGTTGGTGAAACAATATGGTGAAGGAAAATGGGCTCAAATAGCTGAGAAGTTGGATGGAAGAGCAGGCAAACAGTGTAGAGAAAGACGGAATAATCATTTGCGTCCTGATATCAAGAAGACTATTTGGAGTGAAGAGGAAGAGAGAATTTTAGTAGAAAAACATGCAAAAGTTGGAAACCGTTGGGCTGAGATAGCAAAGTGCATCCCTGGAAGAACCGAAAATGCTATAAAGAATCACTGGAATGCCACAAAAAGGAGACAAAATTCAAAGAAAAATAACAAGAAGCAGCAGCAGAAGCAAAATACTACTACACACTCTTCTATACTTGAAGATTACATAACAAGAAAAACAAACACTGTTGTTGCTACTACTACTGTGTTAACTGAAGAACCTTCTAGTGATTCTGTTTCCAATAATAATGATGAGCTACTCTTCATGGAACAGGTTTTCAACCACAGTAATAACAATGACATCACGCAAGTGGATGATAGTCTTTTTTACTCAAGGAAGATCAATATTCATCTTACTTCAGATATGTATCTCTCTCAGTTGATGAATGTAGCAGCAGCAACTACTTCATCATCATCTCTTGGATTATGTGACTATGGTGGGAACCATCAAAGCCTTAACATGATGGATTGCTTAGAAGGGGAGAGGAAGAAATTGCCGGATTTTATGGAGTTCGTTTTTTCTTCCCATCATAATAATCATCAGTTTAAAGGTTGTGCCTCTGGTCAGGATTATTTCAGCTTCTGA 1050 0.3733 MNNNNIANVFADENYLCGGFMWPNCNQESSFVDGLFFANDEEALKWRSMPQNPTLCKKENVQILNKSAKGSKGTKKVSYDAGWIKGQWSEEEDRNLIKLVKQYGEGKWAQIAEKLDGRAGKQCRERRNNHLRPDIKKTIWSEEEERILVEKHAKVGNRWAEIAKCIPGRTENAIKNHWNATKRRQNSKKNNKKQQQKQNTTTHSSILEDYITRKTNTVVATTTVLTEEPSSDSVSNNNDELLFMEQVFNHSNNNDITQVDDSLFYSRKINIHLTSDMYLSQLMNVAAATTSSSSLGLCDYGGNHQSLNMMDCLEGERKKLPDFMEFVFSSHHNNHQFKGCASGQDYFSF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1141g00001 349 CDD SANT 140 182 IPR001005 -
Stsc1141g00001 349 ProSiteProfiles Myb-like domain profile. 85 131 IPR001005 -
Stsc1141g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Stsc1141g00001 349 Gene3D - 84 137 - -
Stsc1141g00001 349 SMART sant 136 184 IPR001005 -
Stsc1141g00001 349 SMART sant 84 133 IPR001005 -
Stsc1141g00001 349 Gene3D - 138 208 - -
Stsc1141g00001 349 PANTHER MYB PROTEIN-RELATED 75 203 - -
Stsc1141g00001 349 MobiDBLite consensus disorder prediction 192 206 - -
Stsc1141g00001 349 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
Stsc1141g00001 349 CDD SANT 88 131 IPR001005 -
Stsc1141g00001 349 FunFam Transcriptional activator Myb isoform A 84 136 - -
Stsc1141g00001 349 MobiDBLite consensus disorder prediction 180 206 - -
Stsc1141g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Stsc1141g00001 349 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Stsc1141g00001 349 Pfam Myb-like DNA-binding domain 88 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1141g00001 Stsc-Chr1141 9679 14831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1141g00001 63 330 MYB Transcription Factor Family AT5G58850 37.574 3.19e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc1141g00001 Myb_DNA-bind_6 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1141g00001 K09422 - aprc:113874412 242.276