Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc113g00017 ATGGCTTCTTCTTTGCATGCTTCTTCTTCACCACCAGCAATAATAATATCATCAATAATTATTCTCATTTTCATCCCATGTTGTGCTTTTGGCTTCCCTATTAATGACACAAAGGTGATAGATGCTCCTCTGTTAACTCAAAAAATAAGAACTAATCGCACCATCAAAGTAGATATCAATGGCAATGGAGACTTCAAATCTGTTCAAGCTGCCATTGATTCCATTCCCGAAGGGAATTCCAATTGGGTCATTGTCCATGTCAGGAAAGGAGTATACAGAGAAAAGGTGCACATACCAAACACTAAGCGTTACATATTCATGAGAGGGAATGGAAAGGGAAGAACAGCCATAGTTTGGTCTCAAAGCTCCTCAGACAACATTGCTTCTGCTACCTTCAAAGTTGAAGCTCCTGATTTCATTGCATTTGGAATTAGCTTCAAGAATGAGGCACCCACCGGTATTGCTTATACCTCACAGAATCAATCGGTGGCTGCATATGTAGCTGCAGATAAAGTTGCATTTTATCATTGTGCATTTTTCAGTACCCATAACACTCTCTTTGATTACAAAGGCAGACACTACTATGAGTCTTGCTACATTCAAGGCTCAATTGATTTCATTTTTGGTCGTGGCAGATCCATCTTTGAGGGTTGTGAGATATTTGTGATTGATGACAAAAGGGTAACGATTCATGGGTCAATCACAGCACAAAACAGAGAGAGTGAACGTGAGATAAGTGGGTTCATATTCATGAGATGCAAGGTTTATGGCATTGGTGGGGTGTACCTAGGAAGGGCTAAGGGTCCTTATTCTAGGGCCATTTTTGCCCAGTCTTATCTCTCCAAGACTGTTGTTCCTCAGGGTTGGACCAATTGGAGCTACGAAGGTTCCACAAAGAATTTGTACCATGCTGAGTACAAGTGCCATGGACCAGGAGCCATAACAGAGGGAAGAGCTCCATGGTCAAGACAACTTACTGATCAACAGGTTGCTTCATTCTTGTCCGTTGATTACATCGATGGCAAGAATTGGTTGCCAGCCTGGCACTAA 1050 0.419 MASSLHASSSPPAIIISSIIILIFIPCCAFGFPINDTKVIDAPLLTQKIRTNRTIKVDINGNGDFKSVQAAIDSIPEGNSNWVIVHVRKGVYREKVHIPNTKRYIFMRGNGKGRTAIVWSQSSSDNIASATFKVEAPDFIAFGISFKNEAPTGIAYTSQNQSVAAYVAADKVAFYHCAFFSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFEGCEIFVIDDKRVTIHGSITAQNRESEREISGFIFMRCKVYGIGGVYLGRAKGPYSRAIFAQSYLSKTVVPQGWTNWSYEGSTKNLYHAEYKCHGPGAITEGRAPWSRQLTDQQVASFLSVDYIDGKNWLPAWH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc113g00017 349 Gene3D - 48 349 IPR012334 -
Stsc113g00017 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 345 - -
Stsc113g00017 349 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Stsc113g00017 349 SUPERFAMILY Pectin lyase-like 51 347 IPR011050 -
Stsc113g00017 349 FunFam Pectinesterase 49 349 - -
Stsc113g00017 349 Pfam Pectinesterase 56 341 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc113g00017 Stsc-Chr113 96497 98303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc113g00017 43 345 Carbohydrate Esterase AT1G05310 38.387 9.15e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc113g00017 - - gmx:100792967 564.303