Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc113g00013 ATGGGAACTTCAGAAGCAAAAGACGAAGAGCTTGTGAAGAAGATAGAGAGGCTTGAAGCTGGCCATGTTCAGCTCAAGCATGAGATGTCCAAGCTCAAGCTTTCTGAACGCCGCCACCATCACCGCCACAGGTCACACTCCTTGTCGCCGCAGCGTTCCAGGCTTGGCGGTGGTGGTGGCGGTGGAGGTGGTGTTTGTAACAACAAAGGTTCTTCTTCTTCACCATTGAAGAGGGAGAGTCGTAGCAGCAATAATAATAATCAGAATCAGAATCAGAATGAAAATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGTTGTTGGTGTGAAGGTTGGGCTTAGTGAGAAGCATTATATGAAGATTTTGCAGTCAATGGGGCACTCTCTTCATATTTTGGATCTTCATTGGCGTATCATATATTGGAATCCTAGTGCCGAAAATCTGTACGGTTATGCAGCAGTGGAGGCTCTTGGAAAAGATGGGATTGGTCTGCTTGTAGACCCTATTGATTACGGCTTAGCGTATGATGTATTCAACCATGTCACTGTGGGGGAGAGTTGGAGTGGCCAGTTCCCTGTCAAGAACAAGATGGGAGCGAAATTTTCGGTTGTGGCAACCAACACACCATTCTATGGTGACGATGGGAAGTTGATTGGGGTTATCTGTGTGTCCATTGATTCAAGACCTTTTCTTGAAGCCCAAGCTACTTTATCGGGTGTGAAGAATGCTTCACCAGATTCAGACTCGGATTATAACCGTCTGAAGAGTGGCATTTCAAATAAACTCGGCCTTGACTCTCACCAGCCACTTCAAGTTGCTCTAGCATCCAAAATTTCTAATTTGGCATCAAAGGTGGGTAATAAAGTTAAGTCAAGAATGAGGACAGGAGAAAACAGTGTTGACCATGATGGTTGGAGCGGAGAAAGGCATCATTCTGATCAGAGTTTCTCGGGTTGTGTTTTTTATGACCAGAAAGAAGATGGTAATTCCAGTGGAGCTAGCACTCCCAGAGGTGATGTACCACCATCTCCATTCGGTGTATTTTATCATGTTGAAGAGAAATCACAAGCGAAATCTTCAAGAGACTCTTGTGACGATGGCGAAGGAAAACCAATTCACAAGATCATAACTTCTAAAGCTGAAGCATGGATTCAAAAGAGAACATTGTCATGGCCGTGGAGAGGAAATGATCGAGCAGGATCTGAGGCAAGAAATGCTCCTAATGCTTGGTCTTTGTTGCAGAATGATCAAGAAAATGAACTGGTTAATCGGACGAATCTTTCTTCCGATTTCAAGATGGAAGTCCAGGCAGTTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATACCATGCCCTGTGGTATGGATCAGATGTTGCAGTCAAAGTATTCTCAAGGCAAGAATATTCAGAAGATGTGATACTATCTTTTAGACAAGAGGTTTCTGTCTTGAAAAGACTTCGCCATCCAAATATTATTCTCTTCATGGGGGCAGTGACTTCTCCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGTTTGCTCCAAAGAAATGCTTCCAAACTTGATTGGAGACGGCGAGTTCATATGGCTTTAGATATCGCACGTGGTGTGAATTATCTTCATCATTGCAGCCCCCCTATTGTTCATCGAGATTTGAAGTCTTCAAATCTCCTAGTTGACAGGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGCCTTAAGTATGAAACATATCTCTCAACTAAAACAGGAAAGGGCACGCCTCAATGGATGGCGCCAGAAGTTCTTCGAAATGAACCCTCGGATGAGAAGTCCGATGTGTACAGCTTTGGGGTGATATTATGGGAACTTGCAACAGAAAAGATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGTGCTGTAGGGTTTATGAACCATCGGTTAGAAATTCCGGCAGATGTTGATCCGCAGTGGGCTTCTATAATGGAGAGCTGCTGGCATAGTGATCCGGCTCAGAGACCGACATTCCAGGAACTTGTGGAAATGCTCAGAGAAATGCAGAGACGGTGTACCATTCAGTTCCAGGCGGCTCGTTCTGCTGCCAATGGAAGTAATCAGAAGGAATCTTAA 2151 0.4468 MGTSEAKDEELVKKIERLEAGHVQLKHEMSKLKLSERRHHHRHRSHSLSPQRSRLGGGGGGGGGVCNNKGSSSSPLKRESRSSNNNNQNQNQNENGDGDGDGDGDGDVVGVKVGLSEKHYMKILQSMGHSLHILDLHWRIIYWNPSAENLYGYAAVEALGKDGIGLLVDPIDYGLAYDVFNHVTVGESWSGQFPVKNKMGAKFSVVATNTPFYGDDGKLIGVICVSIDSRPFLEAQATLSGVKNASPDSDSDYNRLKSGISNKLGLDSHQPLQVALASKISNLASKVGNKVKSRMRTGENSVDHDGWSGERHHSDQSFSGCVFYDQKEDGNSSGASTPRGDVPPSPFGVFYHVEEKSQAKSSRDSCDDGEGKPIHKIITSKAEAWIQKRTLSWPWRGNDRAGSEARNAPNAWSLLQNDQENELVNRTNLSSDFKMEVQAVGEQIGQGSCGTVYHALWYGSDVAVKVFSRQEYSEDVILSFRQEVSVLKRLRHPNIILFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNASKLDWRRRVHMALDIARGVNYLHHCSPPIVHRDLKSSNLLVDRNWTVKVGDFGLSRLKYETYLSTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPADVDPQWASIMESCWHSDPAQRPTFQELVEMLREMQRRCTIQFQAARSAANGSNQKES 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc113g00013 716 MobiDBLite consensus disorder prediction 17 109 - -
Stsc113g00013 716 MobiDBLite consensus disorder prediction 66 97 - -
Stsc113g00013 716 Pfam Protein tyrosine and serine/threonine kinase 440 690 IPR001245 GO:0004672|GO:0006468
Stsc113g00013 716 Gene3D PAS domain 129 230 - -
Stsc113g00013 716 SMART serkin_6 438 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc113g00013 716 CDD PAS 133 228 IPR000014 -
Stsc113g00013 716 Gene3D Phosphorylase Kinase; domain 1 432 515 - -
Stsc113g00013 716 MobiDBLite consensus disorder prediction 292 312 - -
Stsc113g00013 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Stsc113g00013 716 FunFam PAS domain-containing protein tyrosine kinase 431 515 - -
Stsc113g00013 716 ProSiteProfiles Protein kinase domain profile. 438 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc113g00013 716 SUPERFAMILY PYP-like sensor domain (PAS domain) 116 228 IPR035965 -
Stsc113g00013 716 FunFam PAS domain-containing protein tyrosine kinase family protein 516 707 - -
Stsc113g00013 716 MobiDBLite consensus disorder prediction 17 32 - -
Stsc113g00013 716 Coils Coil 15 35 - -
Stsc113g00013 716 ProSiteProfiles PAS repeat profile. 116 187 IPR000014 -
Stsc113g00013 716 NCBIfam PAS domain S-box protein 116 228 IPR000014 -
Stsc113g00013 716 Gene3D Transferase(Phosphotransferase) domain 1 516 716 - -
Stsc113g00013 716 CDD STKc_MAP3K-like 444 690 - -
Stsc113g00013 716 MobiDBLite consensus disorder prediction 33 49 - -
Stsc113g00013 716 SMART pas_2 118 185 IPR000014 -
Stsc113g00013 716 MobiDBLite consensus disorder prediction 291 313 - -
Stsc113g00013 716 Pfam PAS fold 119 226 IPR013767 GO:0006355
Stsc113g00013 716 SUPERFAMILY Protein kinase-like (PK-like) 439 690 IPR011009 -
Stsc113g00013 716 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 104 697 - -
Stsc113g00013 716 PRINTS Tyrosine kinase catalytic domain signature 661 683 IPR001245 GO:0004672|GO:0006468
Stsc113g00013 716 PRINTS Tyrosine kinase catalytic domain signature 617 639 IPR001245 GO:0004672|GO:0006468
Stsc113g00013 716 PRINTS Tyrosine kinase catalytic domain signature 598 608 IPR001245 GO:0004672|GO:0006468
Stsc113g00013 716 PRINTS Tyrosine kinase catalytic domain signature 512 525 IPR001245 GO:0004672|GO:0006468
Stsc113g00013 716 PRINTS Tyrosine kinase catalytic domain signature 551 569 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc113g00013 Stsc-Chr113 81498 86294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc113g00013 9 707 MAP Kinase Kinase Kinase AT3G06620 51.488 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc113g00013 PK_Tyr_Ser-Thr 4.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc113g00013 - - gmx:100800867 917.916