Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc113g00003 ATGAATGAGGTGAACAAGGTTAAATTTTCTGGTGCAGAAGATTGGGGTGAGTCAATGGGAATTGACCCTTTTGGGTCTAGTTTTGAATTCTTTCCTTCACATGGAGGGTACCCTCTATACACTAATAATCAGCAAAAGGGTAATCAGCAGCAGCAAGAAGAACAATTGTCATATCTTGAGTATGGAACATTGGATAATCCACAATTTGATACGGTTTCTACACCACCACAAATCCATACGTACCTTGATGACCTTCACATGTTTGATGAAAATCCAACAAGAATGGTTTCACTAAGTGAAGAATCTGTTGCAAAGGGGAAGCAGCAAAACTCGTCAGCTCCTTTAGCATCACTTGAGTTATTGAAGAGCTATGGCAGCAACAAAGGATTTAAGAAGTCATGTGATGAAGAGAAAATCATGCAACCAATTGATCATTCTGCTGCAGGTGATGAAGTTCTTGGGAGAAAGCTTTCAACTGAAGATGTGATCAGGATAGCAGGAACAAGGTTCATTCAATCTTCATCATCACAAAAATCTTTAGGATCATCAGCTTTGAAGTCCATTTTTGGCCACCCTTTTGGCCAATTTTTCTCAGGACTCTCTGATGAAGAGAAAGAAGAGATTCAACTTGTTGAATCCCTCTTGGCTTGTGCTGAGAAAGTGGGGTTTAAGCAGTTCGAGCGCGCCAGCAAGTTGCTTTGTCAATGCGAGTCCTTATCTTCCAAGACCGGTTCGACAGTTAAGCGTGTTGTTCATTACTTTGCCGAGGCTCTCCGCCTCAGGATTGATATCGGAACGGGAAGAATTTCATCCAAGGACTTGAAAGAGATGCATCCAATCGATCCTAGAGAGGTAACCAAGAATCTTACCCCCTCTGTTTTGGCATTTTATGAAGCAGCTCCTTTCTGTCAGGTCACAATGTTCACTCTAGTCCAATCTGTATTAGAAAATGTTAATGACTCAAAGAAGATTCACATCATTGATTTTGAAATCAGAAAGGGTGTTCAATGGTCAACCCTGATGCAATCCCTTGTGTTAAGAAATCAAAGTCCTTTAGAGCTGCTTAAGATAACAGCTGTTGGAAGTGGAAGCAATTCCAAGCATATCATAGAGGACACTGGTATGAGATTGAAGGATTTTGCAATGAGCTTGAACATAAACCTTTGCTATGATCTTGTTATTGTACCTGACATGCTGCAACTCAAAGCAGATCTATTTAAGATAGATCCTGAGGAAACAGTTGTAGTTTACTCTCAGTATGCACTTGGCCACAAGATTCAGCAGCCGGATCAGCTTGAAACTATCATGAAAGTTATTAAAACAATAAGGCCTAGTCTATTTGTCACAACTGAAGTGGAGGCGAACCACAATTCGACATCATTTGTGAACCGTTTCATCGAGGCGCTATTCTACTTCGGTGCGTTCTTTGATTGTCTAGAAAATTGCATGAAGCATGACGAGCTGAACCGGTCGGTTTTCGAGTCTCAGTACCTTGCTTATGGAATCAAGAACATGTTGGCTGCAGAGGGAGAAGAGAGGAAGGCTAGGAATGTGAGGTTTGAAGTATGGAGGGCATTTTTCTCCAGGTTTGGATTGGTGGAGACAGAGATTAGCATGTTAGCTTTGTTCCAAGCTGAACTTGTTGCTAAAAGTCAATGTAACGCCACATTCCCTCGCTATTATCATCAGCAGGCTCACGCGCCAGAGGCAAGTAGTTTCCCACACGCTTCCATTTTCAACCAAGACGACAGCTACGGCGGCGGCGGCGGCGGTGGTGCTCCTGCACCATCGCCGTCGAGCGGCCACGGCCACGACACGTCATCAATGTTCTACTCTTCTTTCTCAGATATCCTCAGAGGAACCCTACGCGGCCACTCGCTAACGATGCCGGACGAGATCCCTAACTCGCCGAACTCACACAACACTGCACTCAGAGAAATCTGCCGCCACACCGATTACCCCGACGTGTGCGTGTCCACCATAACACCGCATCTGAGCGGCGAGAATTTCGATCTGAACATGGTCCTCCAAGCTTCCATAACGGCGTGCACGGCGGAACTGAAGCTGACGATAGAGAAAGTGAAGAGGCACGAGAACGCGTCTCCACCGGAGAATATAGGTTCAGTTATGTTCGTGGACTGTAAGGTGCAGTACGGGAACGCGCTGGAGAATCTGCAGAAGGCGAGTAACGCTGCTGCAGCGCATGACCTTGGAACGGTTACGATTATGCTGAGTTCTGTTATGGCTGACGTGGCAACGTGTGAGAGTGGATTTCAGGATCTTGAGTCGTCCTCATTCAAAACTGAGTCGGATGGGTTGGTTGGAATTATGGCGAGTAATTCTCTTGCCATTGCTCATATGGTTCCCCATCAATAG 2376 0.4512 MNEVNKVKFSGAEDWGESMGIDPFGSSFEFFPSHGGYPLYTNNQQKGNQQQQEEQLSYLEYGTLDNPQFDTVSTPPQIHTYLDDLHMFDENPTRMVSLSEESVAKGKQQNSSAPLASLELLKSYGSNKGFKKSCDEEKIMQPIDHSAAGDEVLGRKLSTEDVIRIAGTRFIQSSSSQKSLGSSALKSIFGHPFGQFFSGLSDEEKEEIQLVESLLACAEKVGFKQFERASKLLCQCESLSSKTGSTVKRVVHYFAEALRLRIDIGTGRISSKDLKEMHPIDPREVTKNLTPSVLAFYEAAPFCQVTMFTLVQSVLENVNDSKKIHIIDFEIRKGVQWSTLMQSLVLRNQSPLELLKITAVGSGSNSKHIIEDTGMRLKDFAMSLNINLCYDLVIVPDMLQLKADLFKIDPEETVVVYSQYALGHKIQQPDQLETIMKVIKTIRPSLFVTTEVEANHNSTSFVNRFIEALFYFGAFFDCLENCMKHDELNRSVFESQYLAYGIKNMLAAEGEERKARNVRFEVWRAFFSRFGLVETEISMLALFQAELVAKSQCNATFPRYYHQQAHAPEASSFPHASIFNQDDSYGGGGGGGAPAPSPSSGHGHDTSSMFYSSFSDILRGTLRGHSLTMPDEIPNSPNSHNTALREICRHTDYPDVCVSTITPHLSGENFDLNMVLQASITACTAELKLTIEKVKRHENASPPENIGSVMFVDCKVQYGNALENLQKASNAAAAHDLGTVTIMLSSVMADVATCESGFQDLESSSFKTESDGLVGIMASNSLAIAHMVPHQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc113g00003 791 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 643 788 IPR035513 -
Stsc113g00003 791 ProSiteProfiles GRAS family profile. 201 580 IPR005202 -
Stsc113g00003 791 Pfam Plant invertase/pectin methylesterase inhibitor 644 784 IPR006501 GO:0004857
Stsc113g00003 791 CDD PMEI-like_2 641 788 - -
Stsc113g00003 791 MobiDBLite consensus disorder prediction 584 605 - -
Stsc113g00003 791 SMART PMEI_2 639 784 IPR006501 GO:0004857
Stsc113g00003 791 Pfam GRAS domain family 210 550 IPR005202 -
Stsc113g00003 791 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 176 549 IPR005202 -
Stsc113g00003 791 NCBIfam pectinesterase inhibitor domain 635 787 IPR006501 GO:0004857
Stsc113g00003 791 Gene3D Invertase/pectin methylesterase inhibitor family protein 640 789 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc113g00003 Stsc-Chr113 15778 19021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc113g00003 204 548 GRAS Transcription Factor Family AT5G17490 31.250 3.11e-47 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc113g00003 GRAS 1.4e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc113g00003 - - gmx:100818523 580.482