Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1137g00001 ATGGAATCAGAAACACCACACTATTGGTGGAGTGTTGAAATGAAGAACACAACATTCTTTGGTGCACCAAACAATGTTCATAGCCTCATATTTCCTACGAAATTTTCAAACATGTCCCTTTCAATAATAGCCCTCTTTTTCACATGCATTTTCACACACTTTCTTCGTTCAATTATTCATGCACGAAAAAACACAAAACCAAAGCTTCCACTTCCACCAGGACCTTCCCTATTTACCATGTTAGCAAACCTCTTTGAATTCATAAGAAAGCCACAACAAACATTGGCCAAGATTGCTAAGCTTTATGCCCCGGACATAATGCTTTTGAAGCTTGGCCAATCAACCACTGTAATAATATCTTCCCCAAAAATTGCCAAAGAAATTCTCCAAACCAATGATTTGTTGTTTTCAGATCGAACCGTTCCGAGTATTGTAACTTCGCTAGATCACCACAACTATAGCTTGCCCTTTCTTCCGGTTTGTCCTCTCTGGAGAGACTTCAGGAGAATATGCAATGATCAATTATTCGCCAACAAGACCCTTGATGCGAGTCAAGGTCTTAGGCGTAAGAAGCTTCTAGATCTTCTTAGCGATATGCAAAAATACGGTCGGATCGGAGAGGCTGTTGATGTAGGGCATGCGGCTTTTAGAGCATGCATAAATTTCTTGTCATATACTTTTGTGTCTGAGGATTTTGTTGACTCCGTAGAGAATGGAGAGTACAAGGACATTGTGTCCACTCTCTTGAAACTAACGGGAGCAACTAATGTGGTTGATATTTTTCCATTTTTAAAGGTTTTTGATCCTCAAGGTCTCCATAGGCACACTATTGATTATCTTACCAAGTTTTTTCATAGCTTAGACAAGTTGATTGACAAAAGGTTGAAACTAAGAGAGGAACAAGATTATGTCACAAACAATGACATGTTGGATACCCTACTTGACATTTCTCAAGAAGATAGCCAAAAGATGGACAGAAGAAAGATCAGACACTTTTTACTTGATCTCCTTGTAGCAGGTACAGATACAACAGCATATGGATTAGAAAGAACAATGACTGAAGTACTCCACAATCCAGAGGTTATGTTTAAGGCCAAACAAGAATTAGAAGAAACCATTGGAAGAGGTAACCCTATTGATGAGTCAGACATTGCAAAACTTCCATACTTGCAAGCAATAGTGAAAGAGAGTTTACGATTACACCCTCCAGCTCCACTCTTGCTCCCAAGAAAAGCTAAGGTTGATGTGGAGATCTCAGGTTATAGGGTCCCACAAGGCACAAGGGTGCTCATAAATGAATGGGCTATTGGTAGAAACCCTAATGTATGGGACAATCCCAATTCGTTCTTGCCAGAGAGGTTCTTGGGGTCAACAATTGATGTTAAAGGAAGAGATTTTCAGCTGACACCATTTGGGAGTGGGAGAAGAATTTGTCCAGGGTCACCATTAGCTATGAGAATGATTCATGTGATGTCTGGATCTTTGATTAACTGTTTTGATTGGAAAATTGAAAATATGGACAAAGATCTACCCCTGAGAGCTATTCCTGTCATAATCAACAACTAA 1566 0.3959 MESETPHYWWSVEMKNTTFFGAPNNVHSLIFPTKFSNMSLSIIALFFTCIFTHFLRSIIHARKNTKPKLPLPPGPSLFTMLANLFEFIRKPQQTLAKIAKLYAPDIMLLKLGQSTTVIISSPKIAKEILQTNDLLFSDRTVPSIVTSLDHHNYSLPFLPVCPLWRDFRRICNDQLFANKTLDASQGLRRKKLLDLLSDMQKYGRIGEAVDVGHAAFRACINFLSYTFVSEDFVDSVENGEYKDIVSTLLKLTGATNVVDIFPFLKVFDPQGLHRHTIDYLTKFFHSLDKLIDKRLKLREEQDYVTNNDMLDTLLDISQEDSQKMDRRKIRHFLLDLLVAGTDTTAYGLERTMTEVLHNPEVMFKAKQELEETIGRGNPIDESDIAKLPYLQAIVKESLRLHPPAPLLLPRKAKVDVEISGYRVPQGTRVLINEWAIGRNPNVWDNPNSFLPERFLGSTIDVKGRDFQLTPFGSGRRICPGSPLAMRMIHVMSGSLINCFDWKIENMDKDLPLRAIPVIINN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1137g00001 521 Gene3D Cytochrome P450 56 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Stsc1137g00001 521 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 49 506 - -
Stsc1137g00001 521 SUPERFAMILY Cytochrome P450 67 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 FunFam Geraniol 8-hydroxylase 280 512 - -
Stsc1137g00001 521 Pfam Cytochrome P450 72 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 328 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 100 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 124 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 432 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 391 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS E-class P450 group I signature 348 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS P450 superfamily signature 339 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1137g00001 521 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1137g00001 Stsc-Chr1137 8007 10968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1137g00001 45 505 Cytochrome P450 AT2G45550 39.957 6.43e-124 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1137g00001 - - aip:107612182 751.895