Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc112g00016 ATGTTGGAAATGGAGAAGGATTTCGATTCAAAGATGAAGATTCAGGGGAATTCTTCCTCTTCCAATGGTGGTGGTAGTGGTGGGAATAATGTGCCGAGATCCAAAAGCTTTGCTTTTAGGGCTCCTCAGGAGAATTACACCATTCAGGACTTTGAACTCGGCAAGATCTATGGCGTTGGCTCTTACTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACGGGAACTGTGTATGCGATGAAGATCATGGACAAAAAATTCATTACTAAAGAGAACAAAACTGCTTATGTGAAGTTGGAACGCATAGTTCTTGATCAATTGGATCATCCTGGCATTGTGCGCCTATATTTCACATTTCAAGACACGTTTTCTCTTTACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAATCAGGAAAGGGCGTCTACCTGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTCGATGCTCTCGAATACATACATAATTTGGGATTGATACATCGGGATATAAAGCCGGAGAATTTATTGCTTACAGCTGATGGACATATCAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCAAAATCACTGTCCTTCCAAATGCAGCATCTGATGACAAAGCCTGCACATTTGTGGGAACAGCTGCTTACGTCCCTCCAGAGGTTCTTAATTCCTCTCCAGCTACTTTTGGAAATGACATCTGGGCACTGGGATGCACATTATACCAAATGCTTTCAGGAACTTCGCCTTTTAAAGATGCAAGTGAATGGCTTATATTCCAAAGAATTATAGCTAGAGAAATTCGATTTCCTGATTATTTTTCTGATGAAGCAAGAGACCTTATTGACCGGTTATTGGATTTGGACCCCAGAAGAAGACCAGGTGCAGGACCCGACGGTTATGCTGCTTTGAAAAGACACCCATTTTTTAAGGGGGTTGATTGGAGTAACTTAAGGGCACAAACTCCACCAAAACTAGCACTGGAAGCCGGCACTCAGTCACCTATTGTTGATGAAGCTCAGGATGCAGCATGGAGTCCCTCTCATGTCGGTGATGGTTATGCAGCCTCAGCTAGACAGCCTGATGGTGCTCCATCATCGTCTGAGGGGACCGGTCACGTAACCAGGCTAGCTTCAATCGATTCCTTTGATTCAAAATGGCAGCAATTTTTGGAGCCTGGGGAATCTGTGCTTATGATCTCTATGGTGAAGAAATTACAGAAACTAACAAGCAAGAAGGTGCAGCTTATTCTAACTAACAAACCGAAGTTGATCTATGTAGACCCGTCAAAGCTAATTGTCAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGATGAGTCCATCAAATTTCAAGATATGCACACCTAAAAAGGTGATGTCATTTGAGGATGCAAAACAAAGAGCACATCAGTGGAAAAAGGCGATCGAAGGGCTTCAAAACCGGTGA 1491 0.4279 MLEMEKDFDSKMKIQGNSSSSNGGGSGGNNVPRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDTFSLYMALESCEGGELFDQIIRKGRLPEDEARFYAAEVVDALEYIHNLGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSKITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDIWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPRRRPGAGPDGYAALKRHPFFKGVDWSNLRAQTPPKLALEAGTQSPIVDEAQDAAWSPSHVGDGYAASARQPDGAPSSSEGTGHVTRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVMSPSNFKICTPKKVMSFEDAKQRAHQWKKAIEGLQNR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc112g00016 496 FunFam 3-phosphoinositide-dependent protein kinase 2-like 135 333 - -
Stsc112g00016 496 MobiDBLite consensus disorder prediction 13 33 - -
Stsc112g00016 496 Pfam PH domain 393 495 IPR033931 -
Stsc112g00016 496 SMART serkin_6 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc112g00016 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 334 - -
Stsc112g00016 496 Gene3D Phosphorylase Kinase; domain 1 49 134 - -
Stsc112g00016 496 SUPERFAMILY PH domain-like 312 495 - -
Stsc112g00016 496 Coils Coil 476 496 - -
Stsc112g00016 496 FunFam 3-phosphoinositide-dependent protein kinase 2-like 49 134 - -
Stsc112g00016 496 SUPERFAMILY Protein kinase-like (PK-like) 48 373 IPR011009 -
Stsc112g00016 496 MobiDBLite consensus disorder prediction 1 34 - -
Stsc112g00016 496 ProSiteProfiles Protein kinase domain profile. 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc112g00016 496 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc112g00016 496 Gene3D Transferase(Phosphotransferase) domain 1 135 330 - -
Stsc112g00016 496 Gene3D - 374 496 IPR011993 -
Stsc112g00016 496 FunFam 3-phosphoinositide-dependent protein kinase 1 367 496 - -
Stsc112g00016 496 MobiDBLite consensus disorder prediction 358 380 - -
Stsc112g00016 496 CDD STKc_PDK1 49 318 IPR039046 GO:0004674
Stsc112g00016 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc112g00016 Stsc-Chr112 73689 78530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc112g00016 1 496 AGC Kinase Gene Family AT3G10540 81.452 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Stsc112g00016 Pkinase 4.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc112g00016 K06276 - gmx:100801891 887.1