Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc112g00012 ATGGACGAAGGACAAGAGAACCAAGCTATTATTACCAAGAAAAAACCTTCCACTCATCAGGACATTTCTGATGAGTTAGATCTGAAAATAAAGAAGTATCTCAGAGGAGAAGCTGCTTCTTTTGAGGATTTGAAAGATAGAAAGCTCAAGCGGCAACTATCTGTCAGAGAAGAATTATATGGCAATGCAGCGAAAGCTGCTGCCAAGGCAGAGAAGTGGCTTATGCCCAATGAGGGAGGCTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAGGAGGCTATAGCAAAAGAAGTAGGTCTTGTAAACTTAAGGAACCTATATGATATTGTTTTACCAGAGCTTGGTCCATATACCCTGGATTTTACTTCAAGTGGCCGTTATATGGCTGTTGGTGGTCGTAAAGGCCACCTTGGAATCGTGGACATGATAAATCTTAGCCTAATCAAAGAGTTTCAGGTAGGAGAAACAGTGCGTGATGTGGTATTCTTGCATAATGAACTCTTTTTTGCTGCTGCCCAAAAGAAGTTTGTTTACATGTATAATCGAGAAGGCACTGAAATTCACTGCCTCAGGGAACACGGTGCAGCATTAAAGCTTCAGTTTCTGAAAAACCATTTTCTGTTGGCTTCAGTCAACAAATTTGGCCAACTTCATTATCAAGATATTACAATGGGTGAGATGGTGGGTAATTTTCGAACTGGCCTAGGACGCACAAACGTGATGCAAGTGAACCCCTTCAATGCGGTTGTTGGTCTGGGTCACGCAGGTGGTACAGTTACGATGTGGAAGCCAACTAGTTCTGCTCCCCTTGTGAAGATGCTATGTCATCATGGACCTGTTTCAGCGCTAGCGTTCCACTCAAACGGCCACTTAATGGCCACAGCCGGTAAAGACAAGAGGATTAAGCTTTGGGACCTGAGGAAATTTGAGCCTCTTCAAACGATAACAGGTCATGCAAATACTTTGGATTTCAGTCAGAAGGGCTTGCTTGCTTGCGGTAGTGGTTCGTTTGTACGGGTTATGAATGATGTTTCTGGCACACAGAACTATTCTAATTACATGAATCATTCCATGGCGAAAGGTTATCAGATAGGAAGATTAGCATNNNNNNNNNNGTATGAAGATGTTCTAGCCATTGGCCATTCCATGGGTTGGTCTAGTATTCTTATTCCAGGTGCTGGAGAACCCAACTTTGACACATGGGTTGCCAATCCATTTGAAACATCTAAACAGAGGAGAGAGAAGGAAGTGCGGTCTCTTCTCGATAAACTTCCACCCGAGACTATCATGCTTGATCCAAGCAAGATTGGTACGGTGAAATCGACAAGGAGAGAGAAGCCAACAAAGCAAGAGAGGGAGGCCGAAATTGAAGCCGCAGTTGAAGCTGCCAAGAGCACAAAACTGAAGAATAAAACAAAAGGAAGAAATAAGCCAGGTAAAAAGATGCAGAAGAAGCAGGATGCAATTGCAAGAGTGAAGAGGCCTTACTTAGAGGAGAAGATTAACGAGGAACAAAACATTTCCCAAAAGAAGCAGAAAACCAGTGAGAATGTTGAATTACCAAAATCTTTACAGCGGTTTGCTCGTAAGAAATCATCATGA 1614 0.4269 MDEGQENQAIITKKKPSTHQDISDELDLKIKKYLRGEAASFEDLKDRKLKRQLSVREELYGNAAKAAAKAEKWLMPNEGGYLEAEGIEKTWRIKQEAIAKEVGLVNLRNLYDIVLPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIKEFQVGETVRDVVFLHNELFFAAAQKKFVYMYNREGTEIHCLREHGAALKLQFLKNHFLLASVNKFGQLHYQDITMGEMVGNFRTGLGRTNVMQVNPFNAVVGLGHAGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHSNGHLMATAGKDKRIKLWDLRKFEPLQTITGHANTLDFSQKGLLACGSGSFVRVMNDVSGTQNYSNYMNHSMAKGYQIGRLAXXXXYEDVLAIGHSMGWSSILIPGAGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKSTRREKPTKQEREAEIEAAVEAAKSTKLKNKTKGRNKPGKKMQKKQDAIARVKRPYLEEKINEEQNISQKKQKTSENVELPKSLQRFARKKSS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc112g00012 537 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Stsc112g00012 537 SUPERFAMILY WD40 repeat-like 119 352 IPR036322 GO:0005515
Stsc112g00012 537 Pfam BING4CT (NUC141) domain 357 436 IPR012952 -
Stsc112g00012 537 MobiDBLite consensus disorder prediction 485 514 - -
Stsc112g00012 537 Pfam WD domain, G-beta repeat 278 309 IPR001680 GO:0005515
Stsc112g00012 537 SMART WD40_4 106 145 IPR001680 GO:0005515
Stsc112g00012 537 SMART WD40_4 270 309 IPR001680 GO:0005515
Stsc112g00012 537 SMART WD40_4 312 346 IPR001680 GO:0005515
Stsc112g00012 537 SMART WD40_4 148 185 IPR001680 GO:0005515
Stsc112g00012 537 FunFam U3 small nucleolar RNA-associated protein 7 109 392 - -
Stsc112g00012 537 MobiDBLite consensus disorder prediction 470 537 - -
Stsc112g00012 537 SMART BING4CT_2 356 437 IPR012952 -
Stsc112g00012 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 311 - -
Stsc112g00012 537 Coils Coil 501 521 - -
Stsc112g00012 537 Gene3D - 237 362 IPR015943 GO:0005515
Stsc112g00012 537 PANTHER WD-REPEAT PROTEIN BING4 6 533 IPR040315 -
Stsc112g00012 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Stsc112g00012 537 Gene3D - 105 236 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc112g00012 Stsc-Chr112 48703 53086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc112g00012 119 349 U-box Gene Family AT1G04510 24.490 9.40e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc112g00012 K14768 - gmx:100802940 875.93