Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc112g00009 | ATGAACTGTCTTCAGAATCTTCCACGATCCTATGTTTCGCCCTTCCAAATTTCCACGCGCCACCACAAGAATCATCCTTTCTGCTCTGTTTCAATGGGAATCTTCAATAATTCTCATCGCAATCGGAGTATGGCAATTAAGTCTGCTTCTGGTTCCATACCAAGTGCAGAGACAAGTAGTTCTGAGATGAAAGAGGAAAAGTCTGATACATATAGTAACAACATGACAGAAGCCATGGGTGCTGTTTTGACGTATAGGCATGAATTGGGAATGAACTACAACTTCATCCGTCCAGACTTAATAGTAGGATCATGCCTACAGACTCCTGAAGATGTTGACAAACTTCGGAAAATTGGAGTGAAAACCGTATTTTGCTTGCAACAAGATCCAGACCTAGAATATTTTGGAGTTGATATCAACGCCATACGAGAATATGCCAAGGCGTGTGGTGACATTCAGCACTTGCGTGCTCAGATAAGAGACTTTGATGGATTTGATTTACGGATGCGTCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCAAATGGAGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCCGTTGCATTGGCATATATGTTTTGGGTTCAGAGTTATAAACTCAATGAGGCACATAATCTACTCCTGAGCAAAAGGTCATGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACTGCTGACATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTATCATGGGAAGGCCGTAATTGCTCTTCAGTGGAAGTTTCAGGGCTTGATATCGGATGGGGTCAGAGAATGCCCTTAAATTTTGATGACAAGCAGGGTTTGTGGTATCTCAAGAGGGAATTGCCTGAAGGGCACTATGAGTACAAGTACATAGTTGATGGGGAATGGATATGCAACAAGGATGAGCTTATAACTTCTCCCAACAAAGATGGCCATGTCAACAATTTTCTCGACGTCCTTGAGGATCCCAGCAGTGTTCGCGCATCACTTCGGGAGAGATTGACTGGCGACGATCCTGATCTCACAAAGGACGAAAGGCTGAGAATAAGAGAGTTTCTTGAATCCTATCCTGATGAGACTGAGCAGTGA | 1128 | 0.43 | MNCLQNLPRSYVSPFQISTRHHKNHPFCSVSMGIFNNSHRNRSMAIKSASGSIPSAETSSSEMKEEKSDTYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTVFCLQQDPDLEYFGVDINAIREYAKACGDIQHLRAQIRDFDGFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVQSYKLNEAHNLLLSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEGRNCSSVEVSGLDIGWGQRMPLNFDDKQGLWYLKRELPEGHYEYKYIVDGEWICNKDELITSPNKDGHVNNFLDVLEDPSSVRASLRERLTGDDPDLTKDERLRIREFLESYPDETEQ | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc112g00009 | 375 | Gene3D | Immunoglobulins | 247 | 337 | IPR013783 | - | |
| Stsc112g00009 | 375 | SMART | dsp_5 | 92 | 242 | IPR020422 | GO:0006470|GO:0008138 | |
| Stsc112g00009 | 375 | FunFam | Phosphoglucan phosphatase DSP4, chloroplastic | 85 | 266 | - | - | |
| Stsc112g00009 | 375 | SUPERFAMILY | E set domains | 251 | 332 | IPR014756 | - | |
| Stsc112g00009 | 375 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 252 | 334 | IPR032640 | - | |
| Stsc112g00009 | 375 | Pfam | Dual specificity phosphatase, catalytic domain | 135 | 230 | IPR000340 | GO:0008138|GO:0016311 | |
| Stsc112g00009 | 375 | CDD | E_set_AMPKbeta_like_N | 251 | 332 | - | - | |
| Stsc112g00009 | 375 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 92 | 249 | IPR020422 | GO:0006470|GO:0008138 | |
| Stsc112g00009 | 375 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 169 | 227 | IPR000387 | GO:0016311|GO:0016791 | |
| Stsc112g00009 | 375 | CDD | DSP_laforin-like | 91 | 238 | IPR045204 | GO:0019203 | |
| Stsc112g00009 | 375 | Gene3D | Protein tyrosine phosphatase superfamily | 85 | 365 | IPR029021 | - | |
| Stsc112g00009 | 375 | FunFam | Phosphoglucan phosphatase DSP4, chloroplastic | 247 | 337 | - | - | |
| Stsc112g00009 | 375 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 89 | 234 | IPR029021 | - | |
| Stsc112g00009 | 375 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 3 | 372 | - | - | |
| Stsc112g00009 | 375 | MobiDBLite | consensus disorder prediction | 46 | 71 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc112g00009 | Stsc-Chr112 | 35292 | 39542 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc112g00009 | 91 | 368 | Protein tyrosine phosphatase (PTP) family | AT3G52180 | 70.504 | 1.47e-153 | 432 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc112g00009 | - | - | gmx:100804010 | 628.246 |