Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1129g00002 ATGACGAGAAAGAAGGTGAAATTGGCTTATATTTCTGATGACTCAGCAAGAAAAGCAACGTTCAAGAAAAGGAAGAGAGGGATTCTGAAGAAGGTAAGTGAACTCACTGTTCTATGTGGGATTGAAGCTTGTGCTATAATCTCAAACCCCTTTGATTCCAAAGCAGCAGAGGTTTGGCCAGATCCACAGACAGCCAAAGAAGTGATTGCGAAGTATCATAATTCATCTGCCATTGACGAGAGCAAGAACATGAATCAAGAAAGTTTCATGCTGCAGAGAATCTCCAAGGCCAAGGAGTTGCTAAAGAAGAAGCGTAAGGAGAATCGTGAAAAGGAGATGATTCTGTCTATGTATAAGTACATGAAGAGTGATCAAGACCTACCTGAAAACATGACTGTTGAGGAATTGAAATATCTTGATGATTTGATTGATCGGAGTATGAAGGACATTGAAAATAATAAGATGGTGGATCAGCTTGAAGACAGTGATTAG 492 0.3963 MTRKKVKLAYISDDSARKATFKKRKRGILKKVSELTVLCGIEACAIISNPFDSKAAEVWPDPQTAKEVIAKYHNSSAIDESKNMNQESFMLQRISKAKELLKKKRKENREKEMILSMYKYMKSDQDLPENMTVEELKYLDDLIDRSMKDIENNKMVDQLEDSD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1129g00002 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Stsc1129g00002 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc1129g00002 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc1129g00002 163 PANTHER MADS BOX PROTEIN 3 153 - -
Stsc1129g00002 163 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Stsc1129g00002 163 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Stsc1129g00002 163 Coils Coil 91 114 - -
Stsc1129g00002 163 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Stsc1129g00002 163 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc1129g00002 163 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1129g00002 Stsc-Chr1129 16272 16763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1129g00002 1 163 Type I MADS-box Gene Family AT5G48670 44.512 4.12e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc1129g00002 SRF-TF 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1129g00002 - - gmx:100792290 191.815