Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1129g00001 ATGGGAAGGCATTCTTCTTGTTACATGCAGAAGCTTCGAAAGGGTCTGTGGTCACCTGAGGAGGATGAGAAACTTCTCATGCATGTTACTAAGTATGGCCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATAAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCACCAGAAGAAGAGAACCTTATCATTCAGCTTCATGCAGTATTGGGCAATAGATGGTCGCAAATTGCAGCACAATTGCCGGGGAGGACAGACAATGAGATAAAGAATCTTTGGAATTCTTGCTTGAAGAAGAAACTGAGGCAAAAAGGTATAGACCCTGTGACACACAAGAAGATTCCGGAGGCCGAGAACGGCGGCGAGGACAATGGCATGAGGAAGAGGAGCCAAGAAAAGGCAGCAGAAGACTCCAGCCTCATGATGAAATCTGAGAGCTCCAAATCAGATGATGCAGAGCAAAACAGAACATCTTCAAAGAATTTGCATCAAAACTCAGATTTCATGGGTGGTTTTCCAATTCAGATGATGATGACTTATCCATCATCTCATTCAAATTATGCTAATTGGAATAGCCAAAGTAGTGGAAGGCCTTTTCATATGAACACTGAGTTTCCATTCAATACCACCAGTTCTCTTCTTACAACAACAACCGCAACCGCAACCACCACAAATTTCTTGCCTCCTACTGACTCTAGTTTTCTTTACAAGAATTCTTTTTCTTCTTCGGATTCTCCTGAAAATATCTCTAATACTACACCTCCCTACGGATTCAATAGCAGTACAGAATTGAGTAGACTTTCTGATACTTGCAAAGTGGGAGAATACAAAATTCAAATGAGCACAGAAGAAGAAGAAGAAGAATCATCCAAGTGGGATGATTGTTATCATCACTACCTTTATAACCCAATCTCATTGCTTGCTTCTTCTGAATTTTTCGCAATGAAATGA 996 0.4157 MGRHSSCYMQKLRKGLWSPEEDEKLLMHVTKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSPEEENLIIQLHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKKIPEAENGGEDNGMRKRSQEKAAEDSSLMMKSESSKSDDAEQNRTSSKNLHQNSDFMGGFPIQMMMTYPSSHSNYANWNSQSSGRPFHMNTEFPFNTTSSLLTTTTATATTTNFLPPTDSSFLYKNSFSSSDSPENISNTTPPYGFNSSTELSRLSDTCKVGEYKIQMSTEEEEEESSKWDDCYHHYLYNPISLLASSEFFAMK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1129g00001 331 FunFam MYB transcription factor 68 129 - -
Stsc1129g00001 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc1129g00001 331 Gene3D - 14 66 - -
Stsc1129g00001 331 PANTHER MYB DOMAIN PROTEIN 55 1 277 - -
Stsc1129g00001 331 Gene3D - 69 116 - -
Stsc1129g00001 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc1129g00001 331 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc1129g00001 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc1129g00001 331 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc1129g00001 331 CDD SANT 17 61 IPR001005 -
Stsc1129g00001 331 MobiDBLite consensus disorder prediction 122 183 - -
Stsc1129g00001 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc1129g00001 331 FunFam Myb transcription factor 11 67 - -
Stsc1129g00001 331 CDD SANT 69 109 IPR001005 -
Stsc1129g00001 331 SMART sant 13 63 IPR001005 -
Stsc1129g00001 331 SMART sant 66 114 IPR001005 -
Stsc1129g00001 331 MobiDBLite consensus disorder prediction 122 172 - -
Stsc1129g00001 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1129g00001 Stsc-Chr1129 633 2314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1129g00001 1 242 MYB Transcription Factor Family AT4G01680 57.661 3.94e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc1129g00001 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1129g00001 K09422 - gmx:100815881 327.405