Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1125g00001 ATGGAGGCTCAACTCCATGATGACCACGCTAAACGACAAAATCCTCTCAAGCTTTTCGGCTTCAGTGTCGACCACGACGACGATGCCGCCGTTTCAGCGCCCTTCGACGACGCATCAGATTCCATCGCCAAGCCTTCCTCCCCGTTCGCATCGCCGGAATCCAACGCCAGAGACGGAGGCGCGTCGGTGTTTCCTCCCTCCTCCTCCTCCGGCCAAAGAAAGTACGAGTGCCAGTATTGCTGCCGCGAGTTCGCGAACTCGCAGGCTCTGGGAGGCCACCAGAACGCTCACAAGAAAGAACGCCAACAGCTGAAGCGCGCGCAGCTCCAAGCAACTCGAAACGCTGCCGTTTCGTTCATTCGAAACCCGATCATCTCCGCCTTCATCCCGCCTCCTCAACTTCTTGCCCCGCCGGGGTCCGTAATGGTCCAGTCGGGCCCTCATCAGCCATTGCTCTACATGCCGCCACGTGGTGCCCCTCCTCCTTTCCACGTGTCCGTTTCTCACGGCTGCGTCTTCTCTAACAGCAATAGCAACGGAAATTTTAGTAACTGTAACGGTGGTGGTGGTGGTGGGTATTATAGATCCTCGGATGCAGGGGTGGTACCTTACGGTGGTGGAGTAGAGGAATCGTCGCCCAGATTTGACAAGATGGGCTCGCAAGTACAGGCCCGGGCCCATTACGTTAAGATTGAAGGGCCTCCTTTGGGTGGATTATCGTCGAAAGGGGATGTAGGGACAAATTTGGATGATGAGTTAGGTTTGGACTTGCAGCTTGGTCTTGGCCCACCTTGA 795 0.5623 MEAQLHDDHAKRQNPLKLFGFSVDHDDDAAVSAPFDDASDSIAKPSSPFASPESNARDGGASVFPPSSSSGQRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFIRNPIISAFIPPPQLLAPPGSVMVQSGPHQPLLYMPPRGAPPPFHVSVSHGCVFSNSNSNGNFSNCNGGGGGGYYRSSDAGVVPYGGGVEESSPRFDKMGSQVQARAHYVKIEGPPLGGLSSKGDVGTNLDDELGLDLQLGLGPP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1125g00001 264 Gene3D Classic Zinc Finger 55 122 - -
Stsc1125g00001 264 PANTHER ZINC FINGER PROTEIN 5 10 263 IPR044299 GO:0010090
Stsc1125g00001 264 FunFam Zinc finger protein 6 65 125 - -
Stsc1125g00001 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Stsc1125g00001 264 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
Stsc1125g00001 264 MobiDBLite consensus disorder prediction 30 72 - -
Stsc1125g00001 264 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1125g00001 Stsc-Chr1125 5075 5869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1125g00001 16 263 C2H2 Transcription Factor Family AT1G68360 43.243 2.78e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1125g00001 - - tpra:123911684 241.121