Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1120g00001 ATGACATCAAACGGCCACGCCACTAATGACTCTTCCCCTTCTCCTCCTCCACCGTTCAAGATCCCACCTATCAAGTTCACTAATCTCTTCATCAATGGCCAATTTGTTCATTCTCTCTCTGGAAAGGAGTTTGAGACAATAGATCCAAGAACAGGAGAGGTAATAGTGAAAATCTCCGAAGGAAGAAAAGAAGACATTGATGTTGCTGTTCAAGCGGCACGTCACGCATTTGACAACGGTCCATGGCCACGCATGTCCGGTGCGGAAAGAGCAAGAATCATGATGAAATGGGCAGATCTGATTGAAGAAAACTTAGAAGAACTAGCGGCTTTAGACGCCATTGATGCTGGAAAGTTGTTCCACTTAGTTAAGGTCCTGGACATCCCTGCAGTTGCAAGTGCTATACGCTACTATGCCGGTGCCGCCGATAAGATCCACGGAGAGGTGCTAAAAGCTTCTAGAGAGTTCCATGCATATACTCTGATGGAACCAATTGGTGTTGTTGGACACATCATCCCTTGGAATTTCCCTAGCACAATGTTTGCTGCCAAGGTTAGCCCTTCCTTGGCTGCCGGTTGCACCATGGTCCTTAAGCCGGCCGAACAAACGCCTCTATCCGCTTTGTTTTATGCTCATTTAGCTAAGCAGGCTGGAATTCCGGATGGAGTTCTTAATGTAGTACCCGGGTTTGGTCCAACTGCTGGTGCTGCAATAAGTTCTCACATGGACATTGATAAGGTTAGCTTCACCGGTTCGACGGATGTAGGCCGCGCCATAATGCATGCGGCGGCTAGCAGCAATCTGAAGCCGGTGTCACTTGAATTAGGAGGAAAGTCACCGCTTGTAATATTTGATGATGCTGATGTAGATAAAGCTGCCGATCTTGCTCTCTTGGGAATCCTATTTAATAAGGGAGAAATTTGTGTTGCAAGTTCAAGGGTGTTTGTTCAGGAAGGGATATATGATGAGTTTGAGAAGAAGTTGGTTGAGAAAGCCAAAGCTTGGGTTGTTGGAGATCCTTTTGATCCTAAATCTCAGCAAGGCCCTCAGGTTGACAAGAACCAATTTGAGAAAATCCTTTCATATATAGAGATTGGAAAGCAAGAAGGAGCAACTCTATTGACAGGTGGCAAAAGAGTGGGCAACAAGGGCTACTACATCGAACCTACAATTTTCTCCAATGTCAAGGAAGACATGCGCATAGCACAAGATGAAATATTTGGCCCTGTCTTGGCATTGATGAAGTTCAGGAGCATTGAAGAAGCAATAAAGGGTGCTAACAACAGCAGATATGGGCTAGCAGCAGGAATAGTGACAAAGAACATAGACACAGCAAACACAGTGTCAAGGTCAATTCGTGCAGGCATTGTTTGGATAAATTGCTACTTTGCATTTGGGAATGATATTCCTTATGGAGGATATAAGCAGAGTGGGTTTGGAAGAGATTTTGGATTAGAGGCTCTACACAAGTACTTACAAGTCAAATCTGTTGTCACCCCCATTTACAATTCTCCTTGGCTTTGA 1524 0.4482 MTSNGHATNDSSPSPPPPFKIPPIKFTNLFINGQFVHSLSGKEFETIDPRTGEVIVKISEGRKEDIDVAVQAARHAFDNGPWPRMSGAERARIMMKWADLIEENLEELAALDAIDAGKLFHLVKVLDIPAVASAIRYYAGAADKIHGEVLKASREFHAYTLMEPIGVVGHIIPWNFPSTMFAAKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKQAGIPDGVLNVVPGFGPTAGAAISSHMDIDKVSFTGSTDVGRAIMHAAASSNLKPVSLELGGKSPLVIFDDADVDKAADLALLGILFNKGEICVASSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKSQQGPQVDKNQFEKILSYIEIGKQEGATLLTGGKRVGNKGYYIEPTIFSNVKEDMRIAQDEIFGPVLALMKFRSIEEAIKGANNSRYGLAAGIVTKNIDTANTVSRSIRAGIVWINCYFAFGNDIPYGGYKQSGFGRDFGLEALHKYLQVKSVVTPIYNSPWL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1120g00001 507 FunFam Aldehyde dehydrogenase, putative 469 495 - -
Stsc1120g00001 507 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 277 466 IPR016163 GO:0016620
Stsc1120g00001 507 SUPERFAMILY ALDH-like 20 503 IPR016161 GO:0016491
Stsc1120g00001 507 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 19 497 - -
Stsc1120g00001 507 Pfam Aldehyde dehydrogenase family 38 497 IPR015590 GO:0016491
Stsc1120g00001 507 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 273 280 IPR029510 GO:0016491
Stsc1120g00001 507 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 31 495 IPR016162 GO:0016491
Stsc1120g00001 507 FunFam Aldehyde dehydrogenase3 277 466 - -
Stsc1120g00001 507 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 301 312 IPR016160 GO:0016491
Stsc1120g00001 507 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 31 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1120g00001 Stsc-Chr1120 788 10476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1120g00001 20 507 Aldehyde Dehydrogenase Gene Family AT3G24503 73.211 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1120g00001 K12355 - gmx:100791396 852.818