Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1117g00002 ATGGTCAGAAACCTTGTTGAGTTTTGCAATAAGCCCCAACAAACATTGGCCAAGATTGCAAAGCTTTATGGTCCTAACATAATGTTTTTGAAGTTTGGCCAAACAACCACTGTCATAATCTCTTCACCAGACATAGCCAAAGAAGTTCTCCAAACCAATGATTTGTTGTTCTCTGATAGAACCGTTCCGAGCATCGTAACCTCCCTTGATCACCATAACTTTAGCTTGCCCTTTTTACCGGTCTGTCCACTTTGGAAAGATCTAAGAAAAATATGCAACGAACAATTGTTCTCCCACAAAGTCCTTGACCTAAGTCAAGGGCTTCGCCGCAAGAAGCTTCAGGATCTTCTCAACGACATGAGAAAATATGGCGAAACCGGTAAATCCGTCGATGTGGGGCATGCGGCTTTTAGGGCATGTATAAATTTCTTGTCCTACACTTTTGTGTCTGAGGATTTTGTTGAATCCGTAGAAAATGGAGAGTATAAGGACATCGTTTCCACTCTCTTGAAGCTAACGGGGACAACAAATGTGGTGGATATTTTTCCATTTTTGAAAATATTTGATCCTCAAGGTCTTCAAAGACACACTGTTAATTACCTTACTAAATTTTTTCATAGTTTAGACAAGTTGATTGACAAAAGGTTGAAGCTAAGAGAAGATGAAAATTATGTCACAAATAATGATATGTTAGATGCACTCCTTGATGTTTCTCAAGAGGATAGCAAGAGGATGGATAGGAAAAAGATCAGACACTTCTTACTTGATCTTCTTGTAGCGGGTACAGACACAACAGCATATGGATTAGAAAGAGCAATGACTGAAGTACTCCACAGTCCAGAGGTTATGTTCAAAGTCAAACAAGAATTAGAACAAAATATTGGAAGAGGTAACCCTATTCATGAGTCAGACATTGCAAAACTGCCATACTTACAAGCAATAGTAAAAGAGAGTTTACGATTACACCCTCCAGCTCCACTCTTGCTCCCAAGAAAAGCCAAGGTTGATGTTGAAATCTCAGGTTATAGGGTCCCACAAGGAACAAGGGTGCTCATAAATGAATGGGCTGTTGGTAGAAACCCTAATGTGTGGGACAATCCCAATTCGTTCTTGCCAGAGAGGTTCTTGGGGTCAACAATTGATGTTAAAGGAAGAGATTTTCAGCTCACACCGTTTGGAAGTGGGAGGAGAATTTGTCCAGGGTCACCGTTAGCTATGAGAATGATTCATGTGATGTTGGGATCTTTGATTAACTCTTTTGATTGGAAACTTGGAAATATGGACAAGGATCAACCCCTCAAAGCCATTCCGGTTCCTATTATAATAAACAATAATTAA 1338 0.3976 MVRNLVEFCNKPQQTLAKIAKLYGPNIMFLKFGQTTTVIISSPDIAKEVLQTNDLLFSDRTVPSIVTSLDHHNFSLPFLPVCPLWKDLRKICNEQLFSHKVLDLSQGLRRKKLQDLLNDMRKYGETGKSVDVGHAAFRACINFLSYTFVSEDFVESVENGEYKDIVSTLLKLTGTTNVVDIFPFLKIFDPQGLQRHTVNYLTKFFHSLDKLIDKRLKLREDENYVTNNDMLDALLDVSQEDSKRMDRKKIRHFLLDLLVAGTDTTAYGLERAMTEVLHSPEVMFKVKQELEQNIGRGNPIHESDIAKLPYLQAIVKESLRLHPPAPLLLPRKAKVDVEISGYRVPQGTRVLINEWAVGRNPNVWDNPNSFLPERFLGSTIDVKGRDFQLTPFGSGRRICPGSPLAMRMIHVMLGSLINSFDWKLGNMDKDQPLKAIPVPIIINNN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1117g00002 445 PRINTS E-class P450 group I signature 269 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS E-class P450 group I signature 399 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS E-class P450 group I signature 353 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS E-class P450 group I signature 45 66 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS E-class P450 group I signature 389 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS E-class P450 group I signature 249 266 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS E-class P450 group I signature 312 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 2 428 - -
Stsc1117g00002 445 PRINTS P450 superfamily signature 390 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS P450 superfamily signature 399 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS P450 superfamily signature 260 277 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 PRINTS P450 superfamily signature 313 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 SUPERFAMILY Cytochrome P450 4 426 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 392 401 IPR017972 GO:0005506|GO:0016705
Stsc1117g00002 445 Pfam Cytochrome P450 4 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1117g00002 445 FunFam Geraniol 8-hydroxylase 201 435 - -
Stsc1117g00002 445 Gene3D Cytochrome P450 1 437 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1117g00002 Stsc-Chr1117 14425 16447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1117g00002 1 426 Cytochrome P450 AT2G45550 41.435 3.13e-122 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1117g00002 - - aip:107612182 721.85