Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1112g00004 ATGACATCCAACAACCCTTACGAAATCATAGACGATGATGACGATGAGGTATGGATATGGAATTCGACGGGATTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCAACAGAACAAGGTTGGCAGCGGCAGCGGCTGTGATGCAAAGGGGAAGGCGAAGGCGAAGGGAAACAGTGGCGACTCATCCCGGCAATCCACTCTCGATGAGTTTGTGGTCACTGCCAAGAAGGAAGCTCCAGTGCTTCAGGCCCAGCATGAAGAAGAAGAAGAAGTCCCAGCCTCCGCCTCCATCCACCCCATTGATGCAGAAGCAGCCAAAACTTGGATATACCCTGTTAATGTACCTCTCCGTGACTATCAATTTGCCATCACCCAATCCGCACTATTTTCAAACACATTGGTGGCATTGCCAACAGGACTAGGCAAGACCCTCATTGCTGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTTGGAATACCCCAGAAATGGACAATTGATATGACGGGTCAAATAAGTCCTCCCAAAAGAGCTTGTTTTTGGAAAACAAAGCGGGTTTTCTTTGTCACCCCACAAGTGTTGGAGAAAGATATTCATTCTGGTATATGCTCAGTAAAGTACTTTGTGTGTTTGGTCATTGATGAAGCTCACAGAGCCACAGGAAATTACTCTTATTGCGAAGCAGTTCGTGAGCTGATGGCTGTACCAGTGCAACTTAGAATATTAGCATTAACTGCTACCCCAGGATCAAAGAAGCAGACAGTCCAGCATGTCATTGATAATCTTCATATCTCCAAGCTTGAATATCGCAGCGAAATTAATCATGACGTTGTCCCGTATGTTCACAACAGGCAGATAGAGTTGATAGAGGTTCCAATGGGCCAAGATGCGGAAGAAATAAATGAAAAGCTTTTGGAAGTCATACGTCCAATAGTAGCAAGGCTTAATGCTATTGGGGTCATTCAGAATAGAAATTATCGTACTTTGAGCCCTTGTGCGTTACTTGAAATAAGGGAAAAGTTTCGTCAGGGACATAGGCAAGACCTTTCTAATGTGGATGTTGAAGGGTATTTTGGAGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAGTAAGGCCAGCACAAGAAATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGACGACTGATGCAGCAAAGCTTGTCTCATGGAGCATCTAGTCCCAAGCTCTTCAAAATGCTAGAAGTATTACAGGATCATTTTAAAACCAATGATCCCAAGAGTTCAAGGGTAATTATCTTCTCTAATTATAGAGAAAGTGTCAGGGACATTATGGGTGCACTTGGAAATATTGGGGACCCGGTCAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAATCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGTGCCTACAATGTTATTGTTGCTACATCAATCGGTGAAGAAGGTCTTGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCCAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGATATCCTTTGGTTGCCAGTTTTGTGCATTGGCTTGTTAACAATGAGAAAAGCAATTGATGTGGATGGGGATATTCCCCATGTCTTCAAACCTGAAGTTCAATATGTTGAGCTGTCAATTGAGAAATATATTCCTCGTGAAAAGAATGTGAAAGATGTACCACTTTTATTTTATCCATCCATTGATAGACTCACTGTTGCTGAAATGGATTTACTTGAAATGTATTTCCAAACTACTGGGGAAAATAAATGTAGATTGTCTCTTATTGCCTATCCTTACTTTCAAACTTTTCCTTCAAGAGTTCATAAAGTGAAGCATTCCCTTAGAACAATGATGCTTATAGACACGATGCAGCATTTGCAAGGATTAGAAACGTGTCCAGGAGATAACAAAACTACTTCTCTTCAGGAAGGTCCGTGTTTAGGAAACAGCAAGCCGTTTATCATTTCCGAGGCCAAACATGACACTGAATCGTGCTTTAGGGATACAATGGAAAGGAATGTAGACACTGTAAATTGTATGAACTCGGATTCCCATGGTTTGGGGATTCAAACCAAAGATACTATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGGTTGAGCATCAAGAGGATACATTCCAGGGTGATGAGATAGTTCCTGAGACTCCGGATGCCAATAAAAATGTATCAAATGGAGGTGATAATGCTGATGCAACGGCCAATCTTCTGGTCGAGACTCCATTGTTTCCAGAAGATGTATGCATTAATGGCATTAGAGAAGGAGAACTTAGTCCTCGCTTATCTAATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCTGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTGTCATTCGAGACTGTATTTTGCCTGTTCAACTCCACAAAGAACAGGACACGAGTCCCTTGAGTTGTGAAAAAGTTGTAATTGATGGCAGTACTGGCAAGAATTTCACTAGTTCTCCAGTATATAATGGAACTCGAACCCCTTTACTTGAGCTGAAGAATTCTGCAATTAAAAGACGACGCATCATTATTTCCCAAACTGTGGAAGGGCACTCACACAAGTCTGACTCAAGCTTCAGTGAAGAATCACATTTAGGCTCTGGTAAAATCCCTGGAACTATAAGCATTAAACCTTTGCGCAAATTTAAAAGGTTGCGGAAAGCTGAAGATGATGACAGCAAAGTGAATCAGGAAAACAATGATCCCACCCGATATAAGCACGGTCAAGGTCATTCTGGTAAAAGGAAATCAACGAATAATGTGAAAGACTTCATTGAGGAGGAAGCTGAGGTTTCTGGAGAGTCAAATGTATCTAGTGACATAGATGGTGAAGATGACAATTCTTATGAAGACAGTTTCATTGATGACAGGACAAATCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGACTGGACATGATGGCAATTTACAGGCGTTCTTTGCTTACTCAAACGCAGATTAATGGAGGTTATGGGTCTTCTTCCATGTTCAGCCCAGACAGTGTGACTAATGAAAGTGGGGTTTCTTCAGGCAAGACAGTAATGAGTCATGTTAATGGCAGCTGCATAGCCCCAGAAAAAGTGCTGTCAACTAGTTCCCCTACAGGAAACTCTACAAGTCATAAAAGAAGATTGTCATTTTATCATTCAGAAGGACACCTTCCAATTATGAACCTTGAACAACAATTTGCTCTTCAATCAAAGAAAGAGTTGGTGGACGCCCCTGATTTCACTGTGGATTATGAATGCGATGATCAATTTTATAACGACCTTGATCTTGACGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAGATATTTCAACTCAGAAGCAAGATACAAACCCTCTACCTCACTCTCCGAAGGAAGATAGCTTTTGGTGTCCATCGTTTGACCTTGGCATATGA 3672 0.4101 MTSNNPYEIIDDDDDEVWIWNSTGFDWEAAAREIDVVCQQNKVGSGSGCDAKGKAKAKGNSGDSSRQSTLDEFVVTAKKEAPVLQAQHEEEEEVPASASIHPIDAEAAKTWIYPVNVPLRDYQFAITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQISPPKRACFWKTKRVFFVTPQVLEKDIHSGICSVKYFVCLVIDEAHRATGNYSYCEAVRELMAVPVQLRILALTATPGSKKQTVQHVIDNLHISKLEYRSEINHDVVPYVHNRQIELIEVPMGQDAEEINEKLLEVIRPIVARLNAIGVIQNRNYRTLSPCALLEIREKFRQGHRQDLSNVDVEGYFGVLITLYYIHKLLSSHGVRPAQEMLERKLKQGFFAKFMSKNEVILKARRLMQQSLSHGASSPKLFKMLEVLQDHFKTNDPKSSRVIIFSNYRESVRDIMGALGNIGDPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWLPVLCIGLLTMRKAIDVDGDIPHVFKPEVQYVELSIEKYIPREKNVKDVPLLFYPSIDRLTVAEMDLLEMYFQTTGENKCRLSLIAYPYFQTFPSRVHKVKHSLRTMMLIDTMQHLQGLETCPGDNKTTSLQEGPCLGNSKPFIISEAKHDTESCFRDTMERNVDTVNCMNSDSHGLGIQTKDTIDLTIQEDSTFDDLVEHQEDTFQGDEIVPETPDANKNVSNGGDNADATANLLVETPLFPEDVCINGIREGELSPRLSNFITSGVVPESPVDDEQEKSRGKSVIRDCILPVQLHKEQDTSPLSCEKVVIDGSTGKNFTSSPVYNGTRTPLLELKNSAIKRRRIIISQTVEGHSHKSDSSFSEESHLGSGKIPGTISIKPLRKFKRLRKAEDDDSKVNQENNDPTRYKHGQGHSGKRKSTNNVKDFIEEEAEVSGESNVSSDIDGEDDNSYEDSFIDDRTNPIGESQPEVSRLDMMAIYRRSLLTQTQINGGYGSSSMFSPDSVTNESGVSSGKTVMSHVNGSCIAPEKVLSTSSPTGNSTSHKRRLSFYHSEGHLPIMNLEQQFALQSKKELVDAPDFTVDYECDDQFYNDLDLDELEAQAISLHKKKLDISTQKQDTNPLPHSPKEDSFWCPSFDLGI 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1112g00004 1223 SMART ultradead3 115 315 IPR014001 -
Stsc1112g00004 1223 Pfam Helicase conserved C-terminal domain 463 572 IPR001650 -
Stsc1112g00004 1223 MobiDBLite consensus disorder prediction 971 993 - -
Stsc1112g00004 1223 CDD FANCM_ID 326 432 IPR039686 GO:0006281|GO:0043138
Stsc1112g00004 1223 CDD DEXDc_FANCM 117 298 IPR044749 GO:0005524
Stsc1112g00004 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 581 IPR027417 -
Stsc1112g00004 1223 Pfam Type III restriction enzyme, res subunit 132 276 IPR006935 GO:0003677|GO:0005524|GO:0016787
Stsc1112g00004 1223 CDD SF2_C_FANCM_Hef 447 580 - -
Stsc1112g00004 1223 SMART helicmild6 483 573 IPR001650 -
Stsc1112g00004 1223 FunFam Fanconi anemia, complementation group M 114 309 - -
Stsc1112g00004 1223 MobiDBLite consensus disorder prediction 43 69 - -
Stsc1112g00004 1223 Gene3D - 437 583 IPR027417 -
Stsc1112g00004 1223 Gene3D - 115 309 IPR027417 -
Stsc1112g00004 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 621 IPR001650 -
Stsc1112g00004 1223 FunFam ATP-dependent RNA helicase, putative 437 584 - -
Stsc1112g00004 1223 MobiDBLite consensus disorder prediction 933 958 - -
Stsc1112g00004 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 294 IPR014001 -
Stsc1112g00004 1223 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 5 1202 - -
Stsc1112g00004 1223 MobiDBLite consensus disorder prediction 971 1049 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1112g00004 Stsc-Chr1112 7505 17292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1112g00004 454 571 Eukaryotic Initiation Factors Gene Family AT3G13920 29.661 4.69e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1112g00004 K10896 - gmx:100820078 1357.81