Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1111g00002 ATGGAATCTATCCCCCTGATCAATCTGTNNNNNNNNNNTTTGAACGACCAACAATGTACGGTCGCAACCTTCTACAACAACGGAACTCCACAATGCTCTATAATGAAAACTGTGTATGTCACCGGTTATGCAGATCCGTCTCTAAGCTCGATGTCATTTGTTAAGAGATGCTCGGGTCCATTTGCAGTCAACCCTGGCCTCACGGAAACAAATTCGTCTCCCTCCAAACCGGCTCCTGGACTCTGCATTCGGTGTCTAATAGGAGCTTCGTCAGGCACCCTTTTTATGTTTGCCGTGCTCCAGATTGCAATTGGATTCTACATCTACAGAAGAAGAAGCTCTACCAGTAAAATGGTCACTTCATCTTTGGAATTCCCAAACTCAAATGGCTTAGTTGTCTTGTCATTTTCGGAAATTAAGAACCTCACAGGGGATTTCAAGAGTCAGATTGGGCCGAAGATGTTCAAGGGCATCCTACCAAACAATCACCCAGTTGCAGTAAAAGACCTGAATGCATACATCGAAGAAAGGAAGTTCCGGAGTGCTGTTATGAAGATAGGGAGCATCCACCACAGAAACCTCATGAAGCTGGAGGGTTATTGTTGCGAGTTTGACCACAGATTCTTGGTGTATGAATACGCCAAGCACGGTTCATTGGACAAGTACATAGTTGATGCTGCTCTTTGCAGGAAGCTAACCTGGAGAAAGAGAATTGAAATCTGCTCAAGTGTAGCAAAGGCCATAAGTTACTTGCATTCTGGTTGTAGGGAGTTCATAAGTCATGGAAACCTGAAATGCGAAAATGTCATGTTGGATGAGAACTTTGCAGCCAAGGTTGCTGAATTTGGGTTCACAAGAGTAGGTGGTGTGGCAACATATTGTAGTTGTTCAGCCGAGAAGGACATGGAGGATTTTGGCAAGTTAGTATTGACCTTGCTGACAGGGCGCCACAATGATGCTGAACTTTGCGAGTGGGCGTATAAAGAATGGATGGAAGAAAGGGTGACTAATGTGGTTGATAGAAGGATGGAAGGGAGTTACAATCCGGATGAAGCCGAGCGAGCATTGAGAATCGCATTCTGGTGCCTTCAAGTGGATGATCGGCGAAGACCTTCGATGGCGGAGGTACTAAGAGTACTTGATGGTACTTTAAGTGTTGATCCTCCACCACCCCCATTTGAGTATCCTCATAGGCAATTATTGCTGGAAGATGATGATGATTCACAAGAAACTTAG 1236 0.4458 MESIPLINLXXXXLNDQQCTVATFYNNGTPQCSIMKTVYVTGYADPSLSSMSFVKRCSGPFAVNPGLTETNSSPSKPAPGLCIRCLIGASSGTLFMFAVLQIAIGFYIYRRRSSTSKMVTSSLEFPNSNGLVVLSFSEIKNLTGDFKSQIGPKMFKGILPNNHPVAVKDLNAYIEERKFRSAVMKIGSIHHRNLMKLEGYCCEFDHRFLVYEYAKHGSLDKYIVDAALCRKLTWRKRIEICSSVAKAISYLHSGCREFISHGNLKCENVMLDENFAAKVAEFGFTRVGGVATYCSCSAEKDMEDFGKLVLTLLTGRHNDAELCEWAYKEWMEERVTNVVDRRMEGSYNPDEAERALRIAFWCLQVDDRRRPSMAEVLRVLDGTLSVDPPPPPFEYPHRQLLLEDDDDSQET 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1111g00002 411 Gene3D Phosphorylase Kinase; domain 1 107 213 - -
Stsc1111g00002 411 Gene3D Transferase(Phosphotransferase) domain 1 214 291 - -
Stsc1111g00002 411 Gene3D Transferase(Phosphotransferase) domain 1 292 386 - -
Stsc1111g00002 411 PANTHER OS07G0415500 PROTEIN 9 392 - -
Stsc1111g00002 411 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 293 388 - -
Stsc1111g00002 411 ProSiteProfiles Protein kinase domain profile. 125 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1111g00002 411 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 110 213 - -
Stsc1111g00002 411 Pfam Protein tyrosine and serine/threonine kinase 161 288 IPR001245 GO:0004672|GO:0006468
Stsc1111g00002 411 MobiDBLite consensus disorder prediction 387 411 - -
Stsc1111g00002 411 SUPERFAMILY Protein kinase-like (PK-like) 155 397 IPR011009 -
Stsc1111g00002 411 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 214 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1111g00002 Stsc-Chr1111 6958 9434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1111g00002 74 391 Receptor kinase-like Gene Family AT4G05200 29.132 6.88e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc1111g00002 PK_Tyr_Ser-Thr 1.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1111g00002 - - gmx:100815678 598.201