Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc110g00009 ATGGCAGACCCTTACTCTAATTTCTTCAGAGGCTTCTTCCACCATAACCATAACAATAACCATTTCAATCATAATCCTCCTCCTTCTCTTCCTTCTTCTTCTTCTTCTTACCACCACCCCCATCCCTACCTTCATAACTTCATCAACACCACCAATTACAACAATAATAGCACCTTTTTCCATCATCACCATCAAATTACAACAACTGCCACCACTTCTTATTCTTCTTATTATTCTTCACCGCCTTCCCCTCCTCTAAGAGAAGCCCTCCCACTTCTCACTCTCAGCCCGGCAAATAAAGAACCAAAGAAAATTCATCATCATCGCCACCACGACGATGATGATGAATATATTCAACATGATCAAGATCAAGAAATACAAGGTCATATCCTTCCTACCACTATGTCCACCGCCATAGATACTGCAGTACTCGTAATGGACAAGGACTCCAGGATCCATGGCGGCGAACAACAAGAAGCGGACGACAACGACGACGAGGACGAAGAGGAGGAGAAGAACAACAACAGCGTGACAGTTGCACTGCACATAGGGTTACCAAACCCTAGTGCTGCTGAGCTGGCAACAATAACCTCCATGGTATCTTCTTCTTCTAAGAAAAACAATAACAATTCATCTTCAATAGAGAAATATCATCATCAACAAGAAGAAGAACAAGAAGAAGAGGAAGGAAGTGAAGAATCACAATGTCATAAAGGGTTCTTGGGAACAAGGCTCAACAAGGGACAATACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACCCAATTTTCTTGCCCTGTTTGCTACAAAACCTTCAACAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAGGGTCCTGAATCTCTAAGAGGAACCCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCTGGTTGTAGGAACAACATTGACCACCCTAGGTCAAAGCCATTGAAGGATTTCAGAACCCTACAAACTCATTACAAGAGGAAGCATGGCATCAAGCCTTTCATGTGCCGGAAATGCGGCAAGGCCTTCGCCGTCCGAGGCGATTGGCGCACGCATGAGAAGAATTGTGGCAAGCTCTGGTATTGTATCTGCGGATCCGATTTTAAACACAAGAGGTCTCTTAAGGATCATATAAAGGCCTTTGGCAGTGGACACGCCGCCTTTGGGACCGACGGCGGATTATTCGAAGAGGAGGAGGAGCCGGCGTCGGAAGTTGAACAAGATAATGATGAGTTCAACCAGTAA 1290 0.4488 MADPYSNFFRGFFHHNHNNNHFNHNPPPSLPSSSSSYHHPHPYLHNFINTTNYNNNSTFFHHHHQITTTATTSYSSYYSSPPSPPLREALPLLTLSPANKEPKKIHHHRHHDDDDEYIQHDQDQEIQGHILPTTMSTAIDTAVLVMDKDSRIHGGEQQEADDNDDEDEEEEKNNNSVTVALHIGLPNPSAAELATITSMVSSSSKKNNNNSSSIEKYHHQQEEEQEEEEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAFGTDGGLFEEEEEPASEVEQDNDEFNQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc110g00009 429 MobiDBLite consensus disorder prediction 406 429 - -
Stsc110g00009 429 Gene3D Classic Zinc Finger 264 287 - -
Stsc110g00009 429 FunFam Zinc finger protein WIP2 318 400 - -
Stsc110g00009 429 FunFam zinc finger protein WIP2-like 264 287 - -
Stsc110g00009 429 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Stsc110g00009 429 Gene3D Classic Zinc Finger 305 397 - -
Stsc110g00009 429 MobiDBLite consensus disorder prediction 408 429 - -
Stsc110g00009 429 MobiDBLite consensus disorder prediction 202 236 - -
Stsc110g00009 429 Coils Coil 417 429 - -
Stsc110g00009 429 PANTHER ZINC FINGER PROTEIN WIP2 50 426 IPR043584 GO:0003700|GO:0010468
Stsc110g00009 429 MobiDBLite consensus disorder prediction 153 175 - -
Stsc110g00009 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 292 IPR013087 -
Stsc110g00009 429 SUPERFAMILY beta-beta-alpha zinc fingers 330 369 IPR036236 -
Stsc110g00009 429 SUPERFAMILY beta-beta-alpha zinc fingers 234 287 IPR036236 -
Stsc110g00009 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 369 IPR013087 -
Stsc110g00009 429 SMART c2h2final6 265 287 IPR013087 -
Stsc110g00009 429 SMART c2h2final6 349 369 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc110g00009 Stsc-Chr110 100026 104320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc110g00009 177 425 C2H2 Transcription Factor Family AT3G57670 75.676 1.06e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc110g00009 None None None