Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1108g00001 ATGGAAAACCTAGACACCCCATCACACCAATCTCATCAAAGCCAACACAAGAACTTATCTTTGGTTGATGAGAATAAAGGGGTAGTAGTAGTATCAGAAAGTAGCATCATGAAGAATAATAATAGGGTTTCTTCAAATTCATCAAAGGCATCAAAGAAGAAGTTTCTTGGGGTTAGGCAAAGGCCTTCAGGAAGATGGATTGCAGAGATCAAAGATTCTTCACAGAAACTAAGGCTTTGGTTGGGAACTTATGATAGAGCAGAAGATGCTGCACTTGCTTATGATTCTGCTGCAAGGATTCTCAGAGGAAGAAATGCTAAGACAAATTTCCCAATTAGCCATGGAGGTGGTGGACATGGTAGTATTCTTGGGAAGAATCCAAGGGCTTACCAGCTCCTTAAACATCATGCCGTTATGAAGAGCCGCGTCGCGGTTTCATCGGTCAACCAGAACCATGTTAGGGACCAATTTGAGACTTCGATATTCGAGGATAATGATAATAATCTTGTTTGCCCCATCATCCCGGATCAAGAACAAGGTTCATCAGCTGATGGATTTTCATTTGGATGTTGTAAGGTTTATTCTTCTGTTATTGTAGCTCCTTCTTTCAGTG 613 0.4111 MENLDTPSHQSHQSQHKNLSLVDENKGVVVVSESSIMKNNNRVSSNSSKASKKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTYDRAEDAALAYDSAARILRGRNAKTNFPISHGGGGHGSILGKNPRAYQLLKHHAVMKSRVAVSSVNQNHVRDQFETSIFEDNDNNLVCPIIPDQEQGSSADGFSFGCCKVYSSVIVAPSFS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1108g00001 204 MobiDBLite consensus disorder prediction 1 21 - -
Stsc1108g00001 204 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Stsc1108g00001 204 FunFam ethylene-responsive transcription factor RAP2-11 53 112 - -
Stsc1108g00001 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 42 141 - -
Stsc1108g00001 204 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Stsc1108g00001 204 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Stsc1108g00001 204 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Stsc1108g00001 204 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Stsc1108g00001 204 MobiDBLite consensus disorder prediction 1 23 - -
Stsc1108g00001 204 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Stsc1108g00001 204 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Stsc1108g00001 204 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1108g00001 Stsc-Chr1108 316 928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1108g00001 48 110 AP2-EREBP Transcription Factor Family AT5G19790 66.667 1.61e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc1108g00001 AP2 3.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1108g00001 K09286 - gmx:100807374 179.874