Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1100g00002 ATGCCATCAAGAATTGCAACTGCAACCAACAACATTAACAACAACATGAACCTACTTTTCTCATCTCCATCATCCTCCACAGATTCAGATGAAGGATTGGAAGAGAGATACAAGAAGAAGAGAAAATGGAAGGACTACTTCAAGAGTCTAACTAGGCAAGTCCTTGCAAAGCAAGAGGAGATGCAAAATAGGTTCTTGGAAGCCATAGACAAAAGGGAGAGAGAAAGAGTAGCACAAGAAGAATCTTGGAGGTTGAAAGAGATGGCAAGAATCGCCAATGAACACGACGTACTCGTGCAAGAGCGTTCAGCAGTTGCATCCAAAGATGCAGCTGTTATCGCGCTCTTGCACAAGTTGTCTGACGGCCGCGGCCACCAAACACAATCGCCACCACCACAACCACAACCACCACCACAAAAACAACCAACACATACAATAATTAAGCCAAAGAATTCATCTTCATCAAGATGGCCAAAAGCTGAAGTTCATGCATTGATAAGGCTAAGGACAAGTCTTGATCCAAAGTACATGGAGAATGGACCAAAAGGTCCATTATGGGAGGATATATCAGGTGGAATGCAGAGATTAGGGTACAACCGTAGTGCCAAGAGATGCAAAGAGAAGTGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAGGAGAGTAACAAGCAAAGGCGTGAAGATAGCAAGACTTGTCCCTATTTTCATGAGCTTGAAGCTCTATACAAAGAGAAGAGTAACAACAACAACTTTGGAAGTTTCCAGAATAACATGGAGCCGTTGATGGTGCAGCCTGAGCAACAATGGAGGCCTCCACCTGAACCGGAAGAAGAAGGTACTTCCATCAATAATAATAATAATGCATCTAATGAAGAAGAAGAAGAAGAGTATGATGATGATGGTGTTTTAGAAGAAGAAGATGGTGATAGTGTGGGAGAAGAAGAAGAAAGAGGAGGAGGATTAAAGCGTTATGAGATTGCGACAAATGTGAGTTGA 999 0.4224 MPSRIATATNNINNNMNLLFSSPSSSTDSDEGLEERYKKKRKWKDYFKSLTRQVLAKQEEMQNRFLEAIDKRERERVAQEESWRLKEMARIANEHDVLVQERSAVASKDAAVIALLHKLSDGRGHQTQSPPPQPQPPPQKQPTHTIIKPKNSSSSRWPKAEVHALIRLRTSLDPKYMENGPKGPLWEDISGGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSNNNNFGSFQNNMEPLMVQPEQQWRPPPEPEEEGTSINNNNNASNEEEEEEYDDDGVLEEEDGDSVGEEEERGGGLKRYEIATNVS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1100g00002 332 MobiDBLite consensus disorder prediction 144 158 - -
Stsc1100g00002 332 CDD GT1 155 220 - -
Stsc1100g00002 332 FunFam Trihelix transcription factor GT-2 157 218 - -
Stsc1100g00002 332 MobiDBLite consensus disorder prediction 122 159 - -
Stsc1100g00002 332 PANTHER FI21293P1 17 292 - -
Stsc1100g00002 332 MobiDBLite consensus disorder prediction 290 314 - -
Stsc1100g00002 332 MobiDBLite consensus disorder prediction 129 143 - -
Stsc1100g00002 332 MobiDBLite consensus disorder prediction 266 332 - -
Stsc1100g00002 332 Pfam Myb/SANT-like DNA-binding domain 155 242 IPR044822 -
Stsc1100g00002 332 Gene3D - 157 218 - -
Stsc1100g00002 332 ProSiteProfiles Myb-like domain profile. 149 213 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1100g00002 Stsc-Chr1100 19145 20143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1100g00002 38 269 Trihelix Transcription Factor Family AT1G76890 53.725 1.57e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc1100g00002 Myb_DNA-bind_4 5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1100g00002 - - ahf:112802983 389.037