Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1100g00001 ATGCTGGGGGACTCAGCTGTGTTAGGAACAGGAGGAGGCAGCTCTGGAGGAGGAGGAGCCGATGCAGTAGCCACAACGGCCGCAGCTACAACTACAGCTGCGGCCGTTATTACTACTGCATCAGCACCACCGCCACCACAATCAGCAGCACCCCTCGAAAGCGGTGCTGTTGAAATGGGTGGTGGCGGTGGTGGTGGTGGAGGCGGAGGGGGAGGATCGACCTCCGGGGACGAGGAGAAAGGAGAGAGGAGCTTCGGCGGGAACAGGTGGCCGAGACAAGAGACTTTGGCTTTGCTCAAAATACGGTCGGATATGGACGTGGCTTTTCGTGATGCCAGTGTTAAAGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTAGCAGAGCTTGGGTACCACAGGAACGCGAAGAAATGCAAAGAGAAATTCGAGAATGTGTACAAGTATCACAAGAGAACCAAAGATGGTAGAACTGGAAAATCAGAAGGGAAAACATATAGATTCTTTGATCAATTAGAGGCACTTGAAAACAATCCAGCACCAGCACCAGCACCATCAGCAGCAGCATTGCAAGCAACACCAGTGTCCATGGTCAAAACAACTGCATCATTGCCATCACCTCCAATAATTACAACAATGCCACCACAGCAACAACAACAAGTAGTAGTAGTGAGTAGTAGTGCCACCACTACTGTTCCATCAATAGCTACCACTACTATTTCAATGCCTCAAATTATTCAACCCATTAATAATAATAATATTAATAATAATAATAATAATTCTGGATATTTTCCACCACCACCTCCACCGGTCTCTTCATCTTTTCCTAGTATTCCGGCGGGGCTACTCTCGAATTCGAGTTCGTCTTCGACTTCGTCGGAGGAGACGATCGAAGGAGGGAGTAGGCGCAACAAGAGGAAGAGAAGGTGGAAGGATTTCTTCGAGAAGCTAATGAAGGAGGTGATTGAGAAGCAGGAGGATCTGCAGAAGAGGTTCCTTGAAGCAATAGAGAAGAGGGAGAAAGAGAGATCCGCAAGAGAAGAATCATGGAGGTTGCAAGAGTTACAAAGAATCAATAAGGAAAGAGAGATTCTCGCTCAAGAGAGATCCATCGCCGCCGCCAAAGATCAAGCTGTTATGTCCTTCTTGCACAAAATTGCTGAACAACAAAACCTCCCTACGCCATTGAACAATGTTTATCAGCCACCGCCTCCGCCGCCGCCGCCGCCACCGGTCGTAGTGCAGCAGCAACAACAACCACATATTACTACTACTGTAGCTGCTGTTGCTGCTGCGACTATGCCAGTGGTGGTGCCATTGGCGACACCACCACGGCCGCCGCCGCCGTCGGAGATCGTGAAATTTATTGATGATAGCAACAACAATGGTGAGAATAACACTTCAACATTGACGCCGAGTTCTTCGCGGTGGCCGAAAGCGGAGGTAGAGGCCTTGATAAACCTGAGAACAAGCCTTGATGCGAAGTACCAAGAGAATGGACCGAAAGGGCCATTGTGGGAAGAGATTTCGGCATTGATGAGGAAGCATGGTTATAACAGGAACGCTAAGAGGTGCAAAGAGAAGTGGGAGAATATCAACAAGTATTTCAAGAAAGTGAAAGAGAGTAACAAGAAGAGGCCTGAAGATTCCAAGACTTGTCCTTATTTTCACCAGCTTGATGCTCTTTACAGGGAGAAGAAAGGAGCCAAGCAAGACGGTGGTGGTGGTGCTCCGGCCATTACCACAACTCCGTTGATGGTAAGGCCGGAGCAGCAGTGGCCGCCTCAGGCGGAGGCTCCGCCGTCGTCAGCGTTGCAGCCGAGGGAAGTAACCATGGAAGACGCCCAGAAGGGAGATAATGAGGAGATGGAGGAGGAGGAGAAGGATAATATTGGTGATGAAGAGGACGAAGATGACGACGACGAAGATGACGATGAAGGTGGTGGGAACTATGAGATTGTGGCAAGCAAGCCAGTTTCTGCTGAGTGA 1986 0.4945 MLGDSAVLGTGGGSSGGGGADAVATTAAATTTAAAVITTASAPPPPQSAAPLESGAVEMGGGGGGGGGGGGGSTSGDEEKGERSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKDGRTGKSEGKTYRFFDQLEALENNPAPAPAPSAAALQATPVSMVKTTASLPSPPIITTMPPQQQQQVVVVSSSATTTVPSIATTTISMPQIIQPINNNNINNNNNNSGYFPPPPPPVSSSFPSIPAGLLSNSSSSSTSSEETIEGGSRRNKRKRRWKDFFEKLMKEVIEKQEDLQKRFLEAIEKREKERSAREESWRLQELQRINKEREILAQERSIAAAKDQAVMSFLHKIAEQQNLPTPLNNVYQPPPPPPPPPPVVVQQQQQPHITTTVAAVAAATMPVVVPLATPPRPPPPSEIVKFIDDSNNNGENNTSTLTPSSSRWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMRKHGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKKGAKQDGGGGAPAITTTPLMVRPEQQWPPQAEAPPSSALQPREVTMEDAQKGDNEEMEEEEKDNIGDEEDEDDDDEDDDEGGGNYEIVASKPVSAE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1100g00001 661 FunFam Trihelix transcription factor GT-2 476 537 - -
Stsc1100g00001 661 ProSiteProfiles Myb-like domain profile. 88 146 IPR001005 -
Stsc1100g00001 661 CDD GT1 88 153 - -
Stsc1100g00001 661 CDD GT1 474 539 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 276 296 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 1 22 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 396 413 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 393 413 - -
Stsc1100g00001 661 ProSiteProfiles Myb-like domain profile. 474 532 IPR001005 -
Stsc1100g00001 661 Gene3D - 476 537 - -
Stsc1100g00001 661 Gene3D - 90 151 - -
Stsc1100g00001 661 PANTHER FI21293P1 44 613 - -
Stsc1100g00001 661 FunFam Trihelix transcription factor GT-2 90 151 - -
Stsc1100g00001 661 SMART sant 472 534 IPR001005 -
Stsc1100g00001 661 SMART sant 86 148 IPR001005 -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 456 475 - -
Stsc1100g00001 661 Coils Coil 310 337 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 566 661 - -
Stsc1100g00001 661 Pfam Myb/SANT-like DNA-binding domain 474 561 IPR044822 -
Stsc1100g00001 661 Pfam Myb/SANT-like DNA-binding domain 88 174 IPR044822 -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 617 648 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 250 305 - -
Stsc1100g00001 661 MobiDBLite consensus disorder prediction 37 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1100g00001 Stsc-Chr1100 6573 9928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1100g00001 78 592 Trihelix Transcription Factor Family AT1G76880 53.321 4.17e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc1100g00001 Myb_DNA-bind_4 2.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1100g00001 - - gmx:547624 542.347