Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00063 ATGGAAAAGAAGAGGCAGGGTGGCAAGGGCAAAAGCCAAGAAACAAAACGAAGAAACGAAGAAGCCATGCACATGTCCAAACTCGACGTTCAAGCTGCCGTAACCCTCATGGAATCGCGAATTAACGGTGGAAGCGGCAACAGCACCCACCACTACCACCAAATTCAGCCGGAGGCTTCCACGTCGTCGTTCTGGCAACCGGCGGAGCCCAGCCGGATCTTCGATGAGTTGCCGGAAGCCAGCATTGTATCCGTCTCTCGGCCAGACGCCGCTGACATTACCCCCGTTCTCCTCTCTTACACCATTCTTTTTCGTTACAGACAGTTCAAGTGGCAGCTGGTGAAGAAAGCTTCCCAAGTGTTTTATTTGCATTTTATGTTAAAGAAGCGCGCCTTTGTTGAGGAAATACATGAGAAGCAAGAACATGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGACCTCGCATCTTTGGTGCACTTTGATGATGAAGCTGACGATGAAGTCATGCCTTTAAGTCAACATCATCACCTTCACGATGAAAGTGTTAAAGAGAGAGATGTTCCATCTAGTGCTGCTCTACCAGTTCTGCGGCCAGCCTTAGGAACACAAGAGATGACATCAGACAGCGCAAAGATTGCCATGCAGGGCTATCTCAATCACTTTTTGGGAAATATAACTATTGTTAACTCTCGAGAGGTTTGCAAGTTTCTGGCCGTATCTAAGTTATCCTTTTTACCTGAATATGGTTCCAAGCTACAGGAAGATTATGTGATGGTGATGCATCTGCCTAAAATTTCAAAGGATAATGATTCCAGAAAGTGTTGTTTGTCTGATTGTTTTCGTTGTTGTAATGACAACTGGCAAAAGGTTTGGGCAGTACTGAAGCCTGGATTCTTGGCATTGCTAGCAGATCCTTTTGATGTACAGCCTTTGGACATTATTGCTTTTGATGTACTACCTTCCTCGGATGGGAATGTGGATCGTCGTCAATCACTGGCACAAGAAATGGTTGATCGAAATCCCTTGCGCCATTCGTTTAAGGTAACTTGTGGAAACCGGTGTGTTAGAGTTCGAGTAAAAAGTAGGGATAAAGTTCAAGATTGGGTGACAGCAATTAATGATGCTGGACTGAAGCCCCCTGAAGGATGGTGTCATCCCCACCGCTATGGTTCTTATGCTCCTCCAAGAGGCTTAATCAAAGATGGAAGTCAGGCCCAATGGTTTATAGATGGACGTGCCGCATTTGAGGCAATTGCTTCTTCAATCAAGGATGCAAAATCAGAGATATTTATTTGTGGCTGGTGGTTGTGCCCAGAACTGTATCTAAAGCGTCCTTTTCATGCTCATGCTGTTTCAAGGCTTGATTATTTGCTGGAAGAAAGAGCTAAACAAGGGGTCCAGATTTTCGTTCTTATCTATAAAGAGGTAGCACTTGCTTTGAAAATCAACAGTTTTTATAGCAGGAGAAAGCTTCTAAGCATTCATGAGAATGTGAGGGTATTACGCTTTCCTGACCACTTTTCTACTGGTGTTTACTTGTGGTCGCATCATGAGAAACTTGTGATTGTTGACCACCAGATTTGCTTTATTGGAGGACTGGATTTGTGCTTTGGTCGTTATGACACACCTGAACATAAAGTTGGGGATTTGCCTCCTATGATCTGGCCTGGAAAGGACTATTATAATCCTAGGGAATCTGAACCAAATTCATGGGAAGATGTGATGAAAGATGAATTGGACCGTGGAAAATACCCGCGTATGCCTTGGCATGATGTTCATTGTGCACTTTGGGGACCACCTTGTCGAGACATAGCAAGGCACTTTGTTCAGAGATGGAATTATGCAAAGAGGAGCAAAGCTCCAAATGAGCAAGCCATACCGTTACTTATGCCTCGGCATCACATGGTTATTCCACATTACTTGGGAAAAGGCACAGACATGAAGAGTGAATACAAGAATACTGACTTCAACAGAATGATCAGGAGGGAAGACTCCTTTAGCTCAGCAACCGATGATATTCCTTTACTATTGCCTCAGGAGTCTGGTGGGCTCAATACTTCTGAAGAAGACCCGAGAAGTGGGACAACCTCATTTTCATATCTGCGTGACCAGACTACTAGTAGGCTCAGCAGCGGTCTTTCTTTCTCTTTATGGAAGACCAAAGTTGAACCAATTAGTTCTGATACACCCATGAAGGGTTTTGTGGACAATCTTGATACTGTGCAAGTGCATCATCAAAGGAAATTGTCTCTGGAAAGGATGTCTCTGGATAGATTAGTTCTTGGTGATGTACAGAATTCAGATCCAGAGTGGTATAAAAGATCAGGACAGGGTGATCATGGAGGTTTTGCAGAAGACTCTGGACAAGTTGGCCCTCGTGTTTCCTGTCGTTGTCAGGTTATTAGGAGTGTCGCTCAATGGTCAGCTGGAACAAGCCGAACTGAAGAGAGCATCCACAAGGCATATTGCTCTCTAATTGAGAAGGCAGAATACTTCATCTACATTGAGAATCAATTTTTTATCTCAGGTCTTTCACGGGAAGATGTAATACGAAATCGTGTGCTAGAAGCTTTATATCAACGGATTATGCGAGCTTTCAACGATAAAAAGACCTTTAGGGTTATAATTGTCATACCCCTCCTTCCTGGCTTTCAGGGGGGCCTGGACGACAGTGGTGCGGCCTCTGTGAGAGCCATAATGCATTGGCAGTATAGAACTATCTGCCGAGGACAGAATTCTATATTACATAATTTGTATGAACTTCTTGGTTCAAAAATGCATGATTATATCTCTTTCTTCGGCCTCAGGTCATTTGGTAGACTTGGTGATAATGTTCCCTTGGTAACCAGCCAGGTCTATGTTCACAGTAAAATCATGATTATTGATGATTGTACATGTTTGATTGGATCTGCTAATATTAATGATAGGAGTTTACTTGGCTCGAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAGAGAAATGGTTGATTCTTATATGGATGGAAAGCCATGGAAGGCAGGAAAATTCTCCTTGACTCTCCGATTGTCACTATGGTCCGAGCATTTAGGTCTTGGAGCTGGAGAGTCCAAACAAATAATGGATCCAGTTGTTGAGTCTACCTACAACGACATTTGGATGGCAAGGGCAAAGGAAAATACTCAAATTTACCAGGATGTGTTTTCTTGTGTTCCTAATGATGCGATACACAACAGATACGCTTTCAGACAAAGCGTAGCTTTTTGGAAAGACAAGGTAGGCCACAATACTATTGATTTAGGGATAGCTCCGAAAAGGTTAGAATATAATCATGACGGAGTTACCGAGAGCATTGATCCCATGGACAAGATATCGTCAGTGAAAGGCCATCTTGTTTGTTTTCCCCTGGAGTTCATGAGCCTAGAAAATCTAAAACCAGCTTTCAATGAGGGCGAGTTCTATGCTGCCCAAGTTTTCCATTGA 3465 0.4326 MEKKRQGGKGKSQETKRRNEEAMHMSKLDVQAAVTLMESRINGGSGNSTHHYHQIQPEASTSSFWQPAEPSRIFDELPEASIVSVSRPDAADITPVLLSYTILFRYRQFKWQLVKKASQVFYLHFMLKKRAFVEEIHEKQEHVKEWLQNLGIGDLASLVHFDDEADDEVMPLSQHHHLHDESVKERDVPSSAALPVLRPALGTQEMTSDSAKIAMQGYLNHFLGNITIVNSREVCKFLAVSKLSFLPEYGSKLQEDYVMVMHLPKISKDNDSRKCCLSDCFRCCNDNWQKVWAVLKPGFLALLADPFDVQPLDIIAFDVLPSSDGNVDRRQSLAQEMVDRNPLRHSFKVTCGNRCVRVRVKSRDKVQDWVTAINDAGLKPPEGWCHPHRYGSYAPPRGLIKDGSQAQWFIDGRAAFEAIASSIKDAKSEIFICGWWLCPELYLKRPFHAHAVSRLDYLLEERAKQGVQIFVLIYKEVALALKINSFYSRRKLLSIHENVRVLRFPDHFSTGVYLWSHHEKLVIVDHQICFIGGLDLCFGRYDTPEHKVGDLPPMIWPGKDYYNPRESEPNSWEDVMKDELDRGKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRSKAPNEQAIPLLMPRHHMVIPHYLGKGTDMKSEYKNTDFNRMIRREDSFSSATDDIPLLLPQESGGLNTSEEDPRSGTTSFSYLRDQTTSRLSSGLSFSLWKTKVEPISSDTPMKGFVDNLDTVQVHHQRKLSLERMSLDRLVLGDVQNSDPEWYKRSGQGDHGGFAEDSGQVGPRVSCRCQVIRSVAQWSAGTSRTEESIHKAYCSLIEKAEYFIYIENQFFISGLSREDVIRNRVLEALYQRIMRAFNDKKTFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKMHDYISFFGLRSFGRLGDNVPLVTSQVYVHSKIMIIDDCTCLIGSANINDRSLLGSRDSEIGVVIEDREMVDSYMDGKPWKAGKFSLTLRLSLWSEHLGLGAGESKQIMDPVVESTYNDIWMARAKENTQIYQDVFSCVPNDAIHNRYAFRQSVAFWKDKVGHNTIDLGIAPKRLEYNHDGVTESIDPMDKISSVKGHLVCFPLEFMSLENLKPAFNEGEFYAAQVFH 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00063 1154 CDD PLDc_vPLD1_2_yPLD_like_2 811 995 - -
Stsc10g00063 1154 Gene3D - 267 379 IPR011993 -
Stsc10g00063 1154 SUPERFAMILY PH domain-like 285 376 - -
Stsc10g00063 1154 PANTHER PHOSPHOLIPASE D 198 1144 IPR015679 -
Stsc10g00063 1154 FunFam Phospholipase 785 1005 - -
Stsc10g00063 1154 SUPERFAMILY Phospholipase D/nuclease 792 1002 - -
Stsc10g00063 1154 MobiDBLite consensus disorder prediction 681 699 - -
Stsc10g00063 1154 PIRSF PLD_euk 9 650 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc10g00063 1154 PIRSF PLD_euk 717 1154 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc10g00063 1154 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 951 978 IPR001736 GO:0003824
Stsc10g00063 1154 MobiDBLite consensus disorder prediction 1 24 - -
Stsc10g00063 1154 MobiDBLite consensus disorder prediction 672 699 - -
Stsc10g00063 1154 SUPERFAMILY Phospholipase D/nuclease 360 633 - -
Stsc10g00063 1154 SMART PH_update 252 380 IPR001849 -
Stsc10g00063 1154 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 513 540 IPR001736 GO:0003824
Stsc10g00063 1154 CDD PH_PLD 229 376 - -
Stsc10g00063 1154 Pfam PLD-like domain 824 1000 IPR025202 -
Stsc10g00063 1154 Gene3D Endonuclease Chain A 400 634 - -
Stsc10g00063 1154 Pfam Phospholipase D Active site motif 513 540 IPR001736 GO:0003824
Stsc10g00063 1154 CDD PLDc_vPLD1_2_yPLD_like_1 406 551 - -
Stsc10g00063 1154 Gene3D Endonuclease Chain A 784 1011 - -
Stsc10g00063 1154 SMART pld_4 951 978 IPR001736 GO:0003824
Stsc10g00063 1154 SMART pld_4 513 540 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00063 Stsc-Chr10 278738 286783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00063 32 1030 Phospholipase D Gene Family (Wang group) AT3G16785 67.850 0.0 1289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00063 K01115 - gmx:100780514 1746.48