Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00061 ATGAATTCCAACCAAAACAAATCATCCCCTCTTTCACTCAACAACTACAATTTCGATTTCGATCTCGGCATCGGATCCAATCGCCCCAAATCCCTCAATGACCAGAAAACCCCCAATTCCTCCGCCCCTTCCTACTCCTCCTACTCCTCCACCGCCACCGCCACTTCCTCTTCCCAACCGAGGCCCTCCTGGCAACCCGGCAAGCCCTCATGGTCCCACAAGCCCGCATCCACTCCTGCCACTCAGTCTGGCCTGCCCGGTGGTCCCACTTCCATGGTCGGTGACATCTTCGGCAAGACCTGGGGTTCTACCCAACCTTCCGCTTCCGCCTCCGCCTCCGCCTCCGCCTCCACCGTCGGCATCATTAACAAAAACCCTAACCTTTTCGGAGACTTGGTCACCTCTGCGCTTGGCCAAGGTCCAAGGAACTCTTCCAATGTTCCTCTCAAAAATGCAAACCCTGCTTCCAAGCCTTCAGCTCCCGCCAGTTCCACCTTTTCCATGGGAAAAATGGAAGATTCTTTGCCCAAAACTGCTAACACCACACAGACTAGTACAAATTGGGGATCTTCTGCCAATTTAGGGGGTTCTAGTACCGGGTACAGTGGTACCAGTATGAATTCCAACAAAAGCCCGAATCTTGGGGGTCCTTCATTACGAACTATGGGTGTTGGTGGTGCTGCAGCTGGTAGTGGATTCAGTTCCAGTAACAATGATCCCTTTAGTTCTCTCTCTGGTATTGGATCAAAGCAATCTGGTGCTGCTAGTCTTAATTCAGCTGCTAAATCCCAAAGCAATGATTTGGGAGATGATGGTTTTGGAGATTTCCAGAATGCTTACAAGCCAAGCTCTGCAGATTTTCCGTCCACTGGTAATGTCGGAATTGACATTGATTTTGGTGGATCTTCCGCCTCGAATCAGAACCCGGTCCAGGGATCTGCTGGTGCTGCTGATCCAATGGACATGTTTTTCTCATCTTCTGCCGGAGGTGCTGCTGCGGCTACGACTCAAGGATTTGGAGGACAGGCCTCTGCAGAAGGGGATGATTGGGGTCTGGATTCTGAGTTTGGTGGAGGAGGCCATGATGTGGGTGGCACAACCACTGAGCTCGAAGGGCTTCCCCCACCTCCTGCCGGGGTGTCTGGTGCCGCTGCCAAAGGCAAGGGGATGGACAATTACAAGCAGGGCCAGTTTGCTGATGCTATTAAGTGGCTTTCCTGGGCCGTCATCCTTCTAGAGAAAGGCGGGGATAACGCAGGCACTGTGGAGGTTTTGTCATGCAGGGCTTCCTGTTACAAAGAAGTTGGGGAGTATAAGAAGGCAGTGGCAGATTGTACAAAGGTTCTTGAAAATGATGAGAAAAATGTGTCCGTCCTTGTACAGCGTGCTCTCTTGTATGAGAGCATGGAAAAGTATAGACTTGGTGCTGAAGACCTGAGGACTGTGCTAAAGATTGATCCTGGGAACAGAGTTGCCAGAAGTACCGTTCACCGGTTGGCTAAGATGGCCGATTAG 1515 0.5149 MNSNQNKSSPLSLNNYNFDFDLGIGSNRPKSLNDQKTPNSSAPSYSSYSSTATATSSSQPRPSWQPGKPSWSHKPASTPATQSGLPGGPTSMVGDIFGKTWGSTQPSASASASASASTVGIINKNPNLFGDLVTSALGQGPRNSSNVPLKNANPASKPSAPASSTFSMGKMEDSLPKTANTTQTSTNWGSSANLGGSSTGYSGTSMNSNKSPNLGGPSLRTMGVGGAAAGSGFSSSNNDPFSSLSGIGSKQSGAASLNSAAKSQSNDLGDDGFGDFQNAYKPSSADFPSTGNVGIDIDFGGSSASNQNPVQGSAGAADPMDMFFSSSAGGAAAATTQGFGGQASAEGDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGVSGAAAKGKGMDNYKQGQFADAIKWLSWAVILLEKGGDNAGTVEVLSCRASCYKEVGEYKKAVADCTKVLENDEKNVSVLVQRALLYESMEKYRLGAEDLRTVLKIDPGNRVARSTVHRLAKMAD 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00061 504 MobiDBLite consensus disorder prediction 299 313 - -
Stsc10g00061 504 MobiDBLite consensus disorder prediction 28 88 - -
Stsc10g00061 504 MobiDBLite consensus disorder prediction 133 216 - -
Stsc10g00061 504 Pfam Tetratricopeptide repeat 429 455 IPR019734 GO:0005515
Stsc10g00061 504 MobiDBLite consensus disorder prediction 133 223 - -
Stsc10g00061 504 MobiDBLite consensus disorder prediction 1 110 - -
Stsc10g00061 504 SUPERFAMILY TPR-like 384 494 IPR011990 GO:0005515
Stsc10g00061 504 MobiDBLite consensus disorder prediction 1 21 - -
Stsc10g00061 504 PANTHER OS03G0340700 PROTEIN 1 504 - -
Stsc10g00061 504 MobiDBLite consensus disorder prediction 365 386 - -
Stsc10g00061 504 SMART tpr_5 382 415 IPR019734 GO:0005515
Stsc10g00061 504 SMART tpr_5 456 489 IPR019734 GO:0005515
Stsc10g00061 504 SMART tpr_5 422 455 IPR019734 GO:0005515
Stsc10g00061 504 Gene3D Tetratricopeptide repeat domain 381 503 IPR011990 GO:0005515
Stsc10g00061 504 MobiDBLite consensus disorder prediction 258 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00061 Stsc-Chr10 272702 275317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00061 397 499 Calmodulin-binding Proteins AT3G25230 31.132 1.27e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00061 - - pcin:129293443 598.586