Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00058 ATGGCGGGTGATCATCATTTCAGCACCATGGATGATAAGAAGAGGAAGAAGAAGATCGCCATTGTCACCGTCTCTTCCATTCTCCTCGTCGCTATGGTCGGTTGCGTTGCCGTCGGAATTGACATCACTGCCGTCGAAGAACAAGAAACCAGCACCAACACAATCGTCAAGAACCAGAGGAACGCCCACGTCATTTGCCAATCCGCCGAGTACAAAGAAACATGCGAGAAGAGTCTCGAGAAGGCCACCAACAACGGCACCACCGACACCAAGGAACTCATCATTGCAGCCTTCAATGCCACCGCCGACGAAATCGAGAATCAGATCAACGACTCCACTCTCTTCCAGAAAGTGGTGACGGACGACATGAGCAAACAGGCCTTGGATATTTGCAAGGAGGTTCTTGGTTACGCCGTTGAAGATATCCACAGATCGGTTCACATGATGGAGAGGTTCGAGCTCAGCAAGATCCCTCAGTACGCTTACGACCTCAAGATCTGGATCGCCGGTACCCTCGCTCACCAGGAAACTTGCTTGGAAGCCTTCCAGCATGTTCCAACCGAAGCCGGCAAGGAGATGGCTAAGGTTTTGAACACCTCTCTCCAGCTAAGCAGCAACGCTTTGGATATCATCAATGGCGCCAGCAAGATCTACAAGAGCTTCAGCTTGGATAACTTCTTTAAGGGAAGTGGTGGCCATGGCGAGGCCCCTGCTCCAGTCCCTGCACCCGCAGCAGGCAGGAAGCTTCTCTCTGATATAGATGATGACGGTTTGCATTCCTGGATTGAGCTCGGCCGTAGGAGTCTTCTCGAAGCGGAGAATTGGGAAGACCCGACCCGACTGAAACCCGATTGTGTTGTGGCTCAGGATGGCAGCGGAAACTTCAAGACGGTGACGGAGGCCCTCCAGACTGTCCCTAAGAACAACCACAAGCGTTTCGTGATCTATGTGAAGGAAGGCGTTTACAGTGAGTATGTTATCTTGGAGAAGTCCATGTCTCACGTCACCATCGTCGGAGATGGGCCCACTAAGACCAGATTCACCGGCAGCAAGAACTATGTTGATGGTCTTCAGACCTACTACACCTCAACTTTCAGTGTGAATGCTGCTAACTTCATGGCCGTAAACGTTGGGTTCGAGAACACAGCAGGAGCTGCGAAGCACCAAGCGGTGGCGCTTCGTGTGACAGCAGATCAAGCAGTTTTCTACAAGTGCCACATGGATGCATACCAAGACACACTGTACGTGCAATCACAGAGGCAGTACTTCCGCGACTGCACCGTCTCCGGTACCATCGACTTCATCTTCGGTGACGCAGCAGCGGTGTTCCAAAACTGTAGCTTCATTGTGAGGAAGCCAATGGAAACTCAACAATGCATGGTGACTGCTGGTGGAAGGACCAAGATTGATAGCCCAACGGCACTGGTGTTCCAGGACTGCTACTTCAAAGGCACACCGGAATTGACGAGCATGCCCCGCAAGGTGTCGTATCTTGGAAGGCCATGGAAGATATTCTCTAAGGTTGTGATAATGGACTCTGAGATTGATGATATCTTCGTTCCAGAAGGGTACATGCCATGGATGGGGTCAGCGTTCAAGGACACAAGCACATACCTTGAATACAACAACAGGGGAGGTGGTGCTGCTACAAAAGATAGAATAACATGGCCTGGTTTCAAGGTCCTCAACGCTATTGAGGCTGATCAATACTATCCGGCAAAGTTCTATGAGATGTCTAACCATAGTGAGCGTGATGCTTGGATCATTGACTCTGGGGTACCCTCCAATCTCGCCGCCCCACAAACCTCCGTCAAGCTTCCACCACTCTCACTCCCATCCATAAATATCCCTAACATGCTTTAA 1863 0.5089 MAGDHHFSTMDDKKRKKKIAIVTVSSILLVAMVGCVAVGIDITAVEEQETSTNTIVKNQRNAHVICQSAEYKETCEKSLEKATNNGTTDTKELIIAAFNATADEIENQINDSTLFQKVVTDDMSKQALDICKEVLGYAVEDIHRSVHMMERFELSKIPQYAYDLKIWIAGTLAHQETCLEAFQHVPTEAGKEMAKVLNTSLQLSSNALDIINGASKIYKSFSLDNFFKGSGGHGEAPAPVPAPAAGRKLLSDIDDDGLHSWIELGRRSLLEAENWEDPTRLKPDCVVAQDGSGNFKTVTEALQTVPKNNHKRFVIYVKEGVYSEYVILEKSMSHVTIVGDGPTKTRFTGSKNYVDGLQTYYTSTFSVNAANFMAVNVGFENTAGAAKHQAVALRVTADQAVFYKCHMDAYQDTLYVQSQRQYFRDCTVSGTIDFIFGDAAAVFQNCSFIVRKPMETQQCMVTAGGRTKIDSPTALVFQDCYFKGTPELTSMPRKVSYLGRPWKIFSKVVIMDSEIDDIFVPEGYMPWMGSAFKDTSTYLEYNNRGGGAATKDRITWPGFKVLNAIEADQYYPAKFYEMSNHSERDAWIIDSGVPSNLAAPQTSVKLPPLSLPSINIPNML 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00058 620 SMART PMEI_2 57 210 IPR006501 GO:0004857
Stsc10g00058 620 CDD PMEI-like_3 65 216 - -
Stsc10g00058 620 Pfam Pectinesterase 284 576 IPR000070 GO:0030599|GO:0042545
Stsc10g00058 620 SUPERFAMILY Pectin lyase-like 282 576 IPR011050 -
Stsc10g00058 620 FunFam Pectinesterase 58 215 - -
Stsc10g00058 620 NCBIfam pectinesterase inhibitor domain 51 213 IPR006501 GO:0004857
Stsc10g00058 620 Gene3D - 281 598 IPR012334 -
Stsc10g00058 620 PANTHER PECTINESTERASE 24 588 - -
Stsc10g00058 620 FunFam Pectinesterase 4 281 599 - -
Stsc10g00058 620 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 212 IPR035513 -
Stsc10g00058 620 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Stsc10g00058 620 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 214 IPR035513 -
Stsc10g00058 620 Pfam Plant invertase/pectin methylesterase inhibitor 65 210 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00058 Stsc-Chr10 256946 258808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00058 11 594 Carbohydrate Esterase AT3G05610 40.956 2.65e-161 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00058 K01051 - gmx:100800194 768.844