Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00057 ATGGAGAATGGCAATGGAAATTTTAAGAGCAGTTACGACTTCAACAGCAAGATAATGTTGATCTCCATCTTCATTGTCTCCATTGTCCTCATCACAATGATATGCTTCTACATCTACGCCCGCTTGTACCTCCGCAACACTCGCCAACTCCAACGCAATAATCATAGCATCCGTGGCCACCACCACCACCACCCTCACTTCGTATTCTACGTCAACCCTGCCGTCATGTTGGCTTCCCGCGGCCTCAACGCCTCCGTGATTGCCTCCCTTCCCGTCTTCACTTTCTCCCGCAAGACCCACCCTGACGCCGTCGACTGCCCCGTTTGCCTCTCGGAGTTCGAGGAAGGGGAAACGGGTCGGATCTTACCCACGTGCAAGCACAGCTTCCACACCGAATGCATTGATATGTGGTTCCAGTCCCACTCCACCTGCCCAGTTTGCAGGGCACCCGTGGAGCCTCCGAAAGAACCCGAGGTGGTTATAACTGTGTGCGAGTCTGAACCGGGTTCGAGTTCCCAAGGAGAGGATGGGCTGATCCCAAAGGATTCTTCTTCGTCGGTTGTGAATGTGAGCGTTGAGGTGCCCGAAAGAAACGAAGATTCTGGTTGTGAGTCTTCGTCGTCGTCGTCGTTTCGGTCGCCGGTGGGTCGCATGGTATCGTTGAAGAGGATCCTGAGCAGAGAGAAGAAAACGGGTGAGGAAGGTGTGTGTACGATTTGA 720 0.5347 MENGNGNFKSSYDFNSKIMLISIFIVSIVLITMICFYIYARLYLRNTRQLQRNNHSIRGHHHHHPHFVFYVNPAVMLASRGLNASVIASLPVFTFSRKTHPDAVDCPVCLSEFEEGETGRILPTCKHSFHTECIDMWFQSHSTCPVCRAPVEPPKEPEVVITVCESEPGSSSQGEDGLIPKDSSSSVVNVSVEVPERNEDSGCESSSSSSFRSPVGRMVSLKRILSREKKTGEEGVCTI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00057 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 154 IPR013083 -
Stsc10g00057 239 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Stsc10g00057 239 PANTHER RING-H2 FINGER PROTEIN ATL16 14 206 IPR044600 GO:0016567|GO:0016740
Stsc10g00057 239 MobiDBLite consensus disorder prediction 166 192 - -
Stsc10g00057 239 MobiDBLite consensus disorder prediction 166 215 - -
Stsc10g00057 239 CDD RING-H2_EL5-like 105 148 - -
Stsc10g00057 239 MobiDBLite consensus disorder prediction 201 215 - -
Stsc10g00057 239 SUPERFAMILY RING/U-box 86 154 - -
Stsc10g00057 239 FunFam E3 ubiquitin-protein ligase ATL6 72 154 - -
Stsc10g00057 239 Pfam Ring finger domain 105 148 IPR001841 -
Stsc10g00057 239 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00057 Stsc-Chr10 253388 254621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00057 2 232 Rapid Response to Elicitors AT3G16720 40.684 7.79e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00057 - - aip:107638764 323.168