Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00023 ATGTTTCACTCTAAGCATCAATCTCTTACGAGAGCTCTTCTCTTCTTCCTCAACCACACTTCCCCTCTTCCATCTCCATCCACAAAACCTTACCTTCTTCTTTCACCCACGCGCCGCCACACATCACTCTTCTCAACCACCTCCACTTCCGATGGCCACCACTCTTTCACGGTCTCCTATCTCACCACCAAGTGCGGATTCTCCCATGAAGACGCTCTCAAAGCACAGAAGCGCGTTCGCTTTGATACCCCCGTGAAGCCAGATTCCGTCATCTCCCTCTTCAAAGCCCACGGTTTCTCTTTCCCCCAAATCACCACCATCCTTTGCCGCATACCCATGTTCCTGACATGCGACCCCACCAAAGTAATCATCCCAAAGTTTCAATTTTTAGCATCCAAAGGTGCTTCTCCCTCTGACATTGTAGCCATGACCACAAGGAGTCCCCGGTTCCTGCTTCGAAGCCTTGACCACATGGTGCCATTGTACCATTTGTTGAGAAGGTTCTGCCCCTCTGATCTCAAAACCATTGCTTATATAACTGCATGCCCATCTTCCATTACTGATTTTCGTGTCTCTCAAAATGTACAATTGCTCCTTGATGAAGGGTTGACCCATGCCAATATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTGCTCTTCTGATTTGAATAAAACAGTTGAGGAAGTGAAGAAATTGGGGTTTGATCCCACGCAGTCTTATTTCAGTGTGGTGTTGCTGACCAAAAGGGCTGTAACTAGGTCTCAATGGGATGCTAAAGTTGAAGTCCTTAAGAAATGGGGATGGTCTGAACAAGATTTTGAGGAGGCCTTTAGGAGGCACCCTCATTTTATGCTAAGATCTCAGGAGAAACTCAATGCAGTGATGAGTTTATGGATCGGTAAGTTTGGCTGGGATGGTATGTTGCTTTGCATCAGACCAATGCTTTTTGGATACAGTATGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTTAAGTATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTGTGAAGGAGGAGATGTTCCTCAAGAAGTTTGTAACTTGTTTTAATGAGAAAGATAGGTCTCACCTATTAAAGTTATATCAGGGAAGATCTTAG 1152 0.4497 MFHSKHQSLTRALLFFLNHTSPLPSPSTKPYLLLSPTRRHTSLFSTTSTSDGHHSFTVSYLTTKCGFSHEDALKAQKRVRFDTPVKPDSVISLFKAHGFSFPQITTILCRIPMFLTCDPTKVIIPKFQFLASKGASPSDIVAMTTRSPRFLLRSLDHMVPLYHLLRRFCPSDLKTIAYITACPSSITDFRVSQNVQLLLDEGLTHANIHHLLRTRPSVLCSSDLNKTVEEVKKLGFDPTQSYFSVVLLTKRAVTRSQWDAKVEVLKKWGWSEQDFEEAFRRHPHFMLRSQEKLNAVMSLWIGKFGWDGMLLCIRPMLFGYSMEKRLIPRAKVVKYLLSNGLMKKNASIITPFSVKEEMFLKKFVTCFNEKDRSHLLKLYQGRS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00023 383 Pfam mTERF 91 237 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 Pfam mTERF 190 359 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 FunFam Mitochondrial transcription termination factor-like 154 370 - -
Stsc10g00023 383 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 SMART mt_12 209 237 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 PANTHER CGI-12 PROTEIN-RELATED 53 366 IPR003690 GO:0003690|GO:0006355
Stsc10g00023 383 Gene3D Transcription termination factor 3, mitochondrial 176 371 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00023 Stsc-Chr10 121183 122780 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc10g00023 mTERF 7.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00023 K15031 - gmx:102666622 335.88