Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00022 ATGGATGAAATTGGAGGCAGCAGCAGTGGTGAAGGAAGCATGAAGGAACAAGATCGGTTGCTGCCAATAGCAAACGTTGGTAGAATCATGAAGCAGATACTTCCCCAGAACGCCAAGGTGTCCAAGGAGGCGAAGGAAACAATGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCGTGACGAGCGAGGCTTCGGACAAGTGCCGGAAGGAGAGGAGGAAGACCGTGAATGGAGATGACATTTGCTGGGCTTTGGCTTCTCTTGGCTTCGATGATTATGCTCTTCCAATCCGCAGGTATTTGCAGAGGTATCGAGAACTTGATGAGCAGAAATCTGAAGACGAAATTTCCAAGCTTCTCTATATCCAATACAAGAATGCCATTGAAGATTACATTAATTCCAAGGTTCTTCCATCTTTGAGACGAAAGAAAGATGAACTTCTTTTGAGAGAATTACTGAGAAGATGGTCTAATCACAAAACTATGACTTTCTGGTTCTTAAGATTCTTTCACTATCTTGACAGATACTATCTCCCCAGATTTGGCCATCCTTCTACTGAAGAAACAAGTTTGCTCTCTTTCTTTGACTTGGTATTTGATGATGAGATGAATAAACAAGTAGGTGATGCAATATTATCTATGATTGCTAAAGAACGTGTAGGAGAAAAGGTGGATTGGGAATTGATTAACAACATTGTGGCTATCCACTTACAGATCGGAAATAGATCAACCAAAAGCTACACACAAGGCTTTGTAGAAAGACTTGTTAAAGACAATGCTGCATTCTATTCTGATGCAGTTTCAAATTGGATTGCAACCTCTTCCTTCAAGTTTAACACACCAAAGGAAGAGAAATTACATAATGAGAATCCAATAGTTTTATCAAAGAGAATAAAATTGGTGAGTTCTGATGGAGGTGCGTTTGAAGTTGACTATGAAGTTGCATTTATGTCACAAACAATTGAAGATCTCATCAAGGCTGATCCTGCTGCTGCTAGTGATGAAATTTCAATTTCTGTAGTGAGTAGTAAAACACTGAAGAAGGTCATTGAATACTGCAAGAAGCACACTGAATATGAATCTTCTTCCAATTCCATTACCAAGGAGGAGTGGGATGCTGAATTCTTGAAGGTTGACCAACCTGAGAAACTGTTTGACCTTGTTTTAGCTTCAAACTACTTAAACATCAAGAGTCTTCAGAACCTTGTTAGCAATCAAATAGGAAAAATGATGTTAGGGAAGAGTCCAAGTGAAATCCGGAAGATCTTCAACATTAATGAACAATTAACCCCTCAGGAACAAGAGAAAGAGAATAGATACAACCAAAAATCAATTTAG 1335 0.394 MDEIGGSSSGEGSMKEQDRLLPIANVGRIMKQILPQNAKVSKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALASLGFDDYALPIRRYLQRYRELDEQKSEDEISKLLYIQYKNAIEDYINSKVLPSLRRKKDELLLRELLRRWSNHKTMTFWFLRFFHYLDRYYLPRFGHPSTEETSLLSFFDLVFDDEMNKQVGDAILSMIAKERVGEKVDWELINNIVAIHLQIGNRSTKSYTQGFVERLVKDNAAFYSDAVSNWIATSSFKFNTPKEEKLHNENPIVLSKRIKLVSSDGGAFEVDYEVAFMSQTIEDLIKADPAAASDEISISVVSSKTLKKVIEYCKKHTEYESSSNSITKEEWDAEFLKVDQPEKLFDLVLASNYLNIKSLQNLVSNQIGKMMLGKSPSEIRKIFNINEQLTPQEQEKENRYNQKSI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00022 444 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc10g00022 444 Pfam Skp1 family, tetramerisation domain 296 356 IPR016073 GO:0006511
Stsc10g00022 444 SMART skp1_3 294 395 IPR001232 GO:0006511
Stsc10g00022 444 SUPERFAMILY POZ domain 296 359 IPR011333 -
Stsc10g00022 444 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Stsc10g00022 444 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Stsc10g00022 444 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Stsc10g00022 444 Gene3D Histone, subunit A 10 101 IPR009072 GO:0046982
Stsc10g00022 444 SUPERFAMILY Histone-fold 17 112 IPR009072 GO:0046982
Stsc10g00022 444 Gene3D Cullin Repeats 102 195 - -
Stsc10g00022 444 SUPERFAMILY Skp1 dimerisation domain-like 369 436 IPR036296 GO:0006511
Stsc10g00022 444 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 84 IPR003958 -
Stsc10g00022 444 CDD BTB_POZ_SKP1 296 410 - -
Stsc10g00022 444 Gene3D Cullin Repeats 197 290 - -
Stsc10g00022 444 Gene3D Potassium Channel Kv1.1; Chain A 291 443 IPR011333 -
Stsc10g00022 444 Pfam Skp1 family, dimerisation domain 396 442 IPR016072 GO:0006511
Stsc10g00022 444 ProSitePatterns NF-YB/HAP3 subunit signature. 51 67 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc10g00022 444 Pfam Cullin family 109 289 IPR001373 GO:0006511|GO:0031625
Stsc10g00022 444 SUPERFAMILY Cullin repeat-like 115 275 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00022 Stsc-Chr10 112278 116823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00022 14 110 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.443 2.58e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc10g00022 Cullin 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00022 K08065 - ahf:112704153 503.827