Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00015 ATGGAGAGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTTGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGGCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGTTATGGTTCGCGGTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGAGCGGGCCAGCCTGTGTGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTGCATCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTAACATTGTGCCACTAAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAGGAGTGTTCCTATTATGTGAAAACTGGCCAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCCACACCATCACCAGTTCCCCCAGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCGTCTGGTCCTTCACAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCACTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGATGGTGTCCCCTGCCATGGTTCCCTTTTCAGGCTGGGGTCCTTATCAGGTTCAAGCAACAAGCCCCGTAATTCCTTCTAGTACTCCATCTAATGTTGGTCCGACACAGCTTTACAGGATAACCCAGCTTCCTTCTCAGGCAACTGGATATTCTGGACCTTATCAACCTTCTGGCCCCTCTGTGGGTCCCTCAGGTAGTAGTACTCAGAAAGAGAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCAAAGGGGAATGTGGCCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCAGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATTGGATCTCTCAGTTACAGCCCATCTGCTTCTTCCTTGGCTGATATGCCAGTTGCACCGTATCCCGTGGGTTCCTCAATCGGCACTCTTGCTCCATCATCATCTTCATCAGAATTGCGGCCTGAACTTACTTCAGGATTGAGCAAGGAGACTGTTTCATCTAGAATGTCTTCATCAATGAGCACTTCAACTGGATCGGTTGGCTTGACCCTGTCAACTGCTGGACAAATTTCTCAATCCGGCACCCAACCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGTGCCGCAACAAGCAGCACTGCATCTCACACCTCAAGCTAA 1461 0.512 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGGTESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPVCQYFMRTGSCKFGASCKYNHPRQAAGTPNIVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPTPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVMVSPAMVPFSGWGPYQVQATSPVIPSSTPSNVGPTQLYRITQLPSQATGYSGPYQPSGPSVGPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPIGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGLSKETVSSRMSSSMSTSTGSVGLTLSTAGQISQSGTQPSAQSSSSSATASSAATSSTASHTSS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00015 486 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Stsc10g00015 486 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Stsc10g00015 486 MobiDBLite consensus disorder prediction 274 310 - -
Stsc10g00015 486 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Stsc10g00015 486 PANTHER PROTEIN PHOSPHATASE RELATED 36 413 - -
Stsc10g00015 486 Gene3D - 90 173 - -
Stsc10g00015 486 Gene3D - 45 89 - -
Stsc10g00015 486 Gene3D - 302 388 - -
Stsc10g00015 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Stsc10g00015 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Stsc10g00015 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Stsc10g00015 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Stsc10g00015 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 377 IPR000571 GO:0046872
Stsc10g00015 486 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Stsc10g00015 486 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Stsc10g00015 486 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Stsc10g00015 486 MobiDBLite consensus disorder prediction 407 486 - -
Stsc10g00015 486 FunFam CCCH type zinc finger protein 303 388 - -
Stsc10g00015 486 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Stsc10g00015 486 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Stsc10g00015 486 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Stsc10g00015 486 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Stsc10g00015 486 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Stsc10g00015 486 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Stsc10g00015 486 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Stsc10g00015 486 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Stsc10g00015 486 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Stsc10g00015 486 MobiDBLite consensus disorder prediction 1 25 - -
Stsc10g00015 486 MobiDBLite consensus disorder prediction 274 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00015 Stsc-Chr10 66849 71204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00015 1 447 C2H2 Transcription Factor Family AT5G18550 55.459 5.70e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc10g00015 zf-CCCH 9.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00015 - - gmx:100789405 693.73