Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00014 ATGTCAACCTCTAGAACCTTCATCAAGGGATATGATGAACCAAACAATAACCATCAAAACCAAAACCAGATATGCTTGTCTACACTTCTCCAGAGAAACACATCAACAGCATCATGTGGTGAAAAGAGAGGGAGAAGGAAGCAAGCAGAGCCAGGTAGGTTTCTTGGTGTGAGGAGAAGACCTTGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGTACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAACCCAAGCTAGAACTAACTTCATCTATTCTGATAACATCAACTTCCATGCTCTTCTCACACCTATGGATCTTCAAGCTCTCTTGCCACCACCACCACCACCACCAACAACAACAACAACAACAACTCCTCCTTCTTACACTAACAAACTTGCAGCACCTTCCAATCAAAATAAGATTAAGAATAAGAATAATGCTGCTTCTGCTGCTGCAGCATATGGGTGTTCTGTTCAGGATGATAATAACTTGTTCTTTTCAAGTGATCATAGTAGTAACAACAACTCTGGATATCTTGAATGCATTGTTCCTGATAACTGTTTCAGGCCTACTGCTACTGCTTCAAGTTCCAACAGTAGTAGTTCATCAAGAAAGAGCAATGTCAGTGAAAAATCATCATATCTTGAAAACATAGCCTCATCATCATCATCATCATCATTCTCTTGTAATAACTTCTCATCATCTGATTTTTGTTATCCAACAAGTGAAGTTAGTGAAGGTTTCTCATCATCATGGGATTGGAGCTGCAGTGAGCTTTCAGCTATATTTAACAATTCATCATCATCATCATCATCAAGGGGAATAGAAGGAGGATGCATGGATGCACTTTATCCAATCATAACTGATGAGAATAATAATAATAACAACAACAATCCAAGCTGCTATGATATGGGGTGGTGGTGA 984 0.4004 MSTSRTFIKGYDEPNNNHQNQNQICLSTLLQRNTSTASCGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGTQARTNFIYSDNINFHALLTPMDLQALLPPPPPPPTTTTTTTPPSYTNKLAAPSNQNKIKNKNNAASAAAAYGCSVQDDNNLFFSSDHSSNNNSGYLECIVPDNCFRPTATASSSNSSSSSRKSNVSEKSSYLENIASSSSSSSFSCNNFSSSDFCYPTSEVSEGFSSSWDWSCSELSAIFNNSSSSSSSRGIEGGCMDALYPIITDENNNNNNNNPSCYDMGWW 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00014 327 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Stsc10g00014 327 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Stsc10g00014 327 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Stsc10g00014 327 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Stsc10g00014 327 CDD AP2 53 109 IPR001471 GO:0003700|GO:0006355
Stsc10g00014 327 Pfam AP2 domain 56 102 IPR001471 GO:0003700|GO:0006355
Stsc10g00014 327 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Stsc10g00014 327 FunFam Ethylene-responsive transcription factor 2 53 111 - -
Stsc10g00014 327 MobiDBLite consensus disorder prediction 129 149 - -
Stsc10g00014 327 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 249 - -
Stsc10g00014 327 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00014 Stsc-Chr10 64487 65470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00014 1 233 AP2-EREBP Transcription Factor Family AT5G18560 44.086 1.01e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc10g00014 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00014 - - aip:110263494 393.275