Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00012 ATGCGAGGATCTCATCACAAAAACCTGTTCTTGTACCACCTCACTGTCATCACAAGAACCCCATCACCCCCATTTCTCAAGGTTCATGCCCAACTCCTGATCCCTTCATCATCTTCCCCATTCCCTGCTCCCAATTACACCACACTCACAATAACCCCAGAAAAACAATCCTTTACGGTGAATTACCTCGTCAAAAATTGTGGGTTCCTCCCAGATGGCGCTCTTCATGCTTCAAAATACGTCCTTTTTGAGACTCCAGAGAAACCCGACTCAGTCATCGAACTCCTCAGAAGCTTCGGTTTCTCAGATTTGCAGATTCACAATGTTATTCGGAAAACGCCCAGGATTCTCGTCAGCAAGCCCCAAGAGACTCTCTTGCCCAAGCTCCAGTTCCTCATCTCCAAAGGCGCTTCACAATCACAACTTGCCCGCATCATCGATCTCAACCCTTTAATCTTGCTAAGAAGCTTAGAGAAGCACCTAATCCCCACTTTCGATTTGTTGACCAATTTCATTGGTTCTGAAGAAAGGACCCTTAATTCTCTTAAACGTGGTCCCCAAATCTTAACATGCTATATGTTCCATCAAAATATCAACTTGTTGGTTGATTCAGGGGTACGTGAGATAAGCATCGCAAGGCTACTTCGCCAATGGCCTTGGTTGCTATCATTCAATTTCCAATGTATTAAGAGGGCGGTAGAGGAAGTAATTGAAATAGGGATTGATCCCCCTAAGGCTAATTTTGTTCCTGCATTGTATGCTAAGTTGCTTCCAAAGTCCACGTGGGATAAGAAAGTTGAGTTTTACAAGAGGTTTGGATTAACTGATGATAACATTCGTGAGGCTTTTGTGAAGCACCCTTTCTGTATGATGTTATCTGAGCAGAAAATTGAGGCCACCATGGGATTCTTTCTCAAAGAGCTCGGGTGGGAGTCGGTTCAAGTTGCCCGGAGACCGGTTCTCCTCGCCCTGAATTTGGACAAGAGGATTGTTCCGAGGGCTGCTGTCGTGAAGATTCTTATCTCCAATGGTGTCATTAGGAGTGGTAGGCATTTGTCTGCATATACTGCTAAGGAAGAGACGTTCTTTGAGAAGTATGTGAATCGTTTTAAGGATCAAGCACCGAAGTTATTAAAGGTGTATCGGGAGAAAATGAATCCTCCAGTAAAGAAAAGTAAATTGAAGTCTTGA 1191 0.4408 MRGSHHKNLFLYHLTVITRTPSPPFLKVHAQLLIPSSSSPFPAPNYTTLTITPEKQSFTVNYLVKNCGFLPDGALHASKYVLFETPEKPDSVIELLRSFGFSDLQIHNVIRKTPRILVSKPQETLLPKLQFLISKGASQSQLARIIDLNPLILLRSLEKHLIPTFDLLTNFIGSEERTLNSLKRGPQILTCYMFHQNINLLVDSGVREISIARLLRQWPWLLSFNFQCIKRAVEEVIEIGIDPPKANFVPALYAKLLPKSTWDKKVEFYKRFGLTDDNIREAFVKHPFCMMLSEQKIEATMGFFLKELGWESVQVARRPVLLALNLDKRIVPRAAVVKILISNGVIRSGRHLSAYTAKEETFFEKYVNRFKDQAPKLLKVYREKMNPPVKKSKLKS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00012 396 FunFam Mitochondrial transcription termination factor-like 157 374 - -
Stsc10g00012 396 Gene3D Transcription termination factor 3, mitochondrial 70 193 IPR038538 -
Stsc10g00012 396 Gene3D Transcription termination factor 3, mitochondrial 194 374 IPR038538 -
Stsc10g00012 396 SMART mt_12 212 242 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 SMART mt_12 143 175 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 SMART mt_12 312 346 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 SMART mt_12 280 311 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 Pfam mTERF 194 346 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 Pfam mTERF 93 190 IPR003690 GO:0003690|GO:0006355
Stsc10g00012 396 PANTHER CGI-12 PROTEIN-RELATED 54 369 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00012 Stsc-Chr10 48162 49501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc10g00012 mTERF 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00012 K15031 - csin:114314112 296.589